Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,843,238 – 4,843,328 |
Length | 90 |
Max. P | 0.644661 |
Location | 4,843,238 – 4,843,328 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 80.59 |
Mean single sequence MFE | -32.28 |
Consensus MFE | -22.16 |
Energy contribution | -22.92 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.35 |
Mean z-score | -1.44 |
Structure conservation index | 0.69 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.644661 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4843238 90 - 22224390 GACGAUGGCCCCGACUAGAGCCAAAGGUAUAGUGGAUGAUGCCGCGUCGUGUGCGAAGGAUAUCGUUCAGAAAGCCAUUGGUCAUCUCAU (((((((((....((((..(((...))).))))((((((((((...(((....))).)).)))))))).....)))))).)))....... ( -29.30) >DroPse_CAF1 48569 90 - 1 GGCGCUCGGCACCACCUCUGCCGAGGGAAUAGUGGAUGACACCGCGUUUUGUUUUGAGCACAUCUGCGAGCGGAUCCGAGCUCAUUUCGU ....(((((((.......)))))))(((((.((((......))))..........((((.((((((....)))))..).))))))))).. ( -28.40) >DroSec_CAF1 41761 90 - 1 GCCGAUGGCCGCGACUAGAGCCAAAGGUAUAGUGGAUGAUGCCGCGUCGUGUGCGGAGGAUAUCGUUCAGAAAGCCAUUGGUCAUCUGAU (((((((((....((((..(((...))).))))((((((((((...(((....))).)).)))))))).....)))))))))........ ( -31.30) >DroSim_CAF1 41769 90 - 1 GCCGAUGGCCGCGACUAGAGCCAAAGGUAUAGUGGAUGAUGCCGCGUCGUGUGCGGAGGAUAUCGUUCAGAAAGCCAUCGGUCAUCUGAU (((((((((....((((..(((...))).))))((((((((((...(((....))).)).)))))))).....)))))))))........ ( -33.40) >DroEre_CAF1 52113 90 - 1 GCCGAUGGCCCCGACUAUCGCCAAAGGUAUAGUGGAUGAUGCCGCGCCGGGUGCGGAGUACAUCGUUCAGAUAGCCAUCGGUCAUCUUGU (((((((((....(((((.(((...))))))))((((((((((((((...))))))....)))))))).....)))))))))........ ( -37.70) >DroYak_CAF1 43589 90 - 1 GCCGAUGGCCCCGACUAUCGCCAAAGGUAUAGUGGAUGAUGCCGCGUCGAGUGCGGAGGACAUCGUUCAGAUAGCCAUUGGUCAUCUUGU (((((((((....(((((.(((...))))))))(((((((((((((.....)))))....)))))))).....)))))))))........ ( -33.60) >consensus GCCGAUGGCCCCGACUAGAGCCAAAGGUAUAGUGGAUGAUGCCGCGUCGUGUGCGGAGGACAUCGUUCAGAAAGCCAUUGGUCAUCUCAU (((((((((((((((....(((...)))...((((......))))))))))...(((.(....).))).....)))))))))........ (-22.16 = -22.92 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:48 2006