Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,756,847 – 4,756,956 |
Length | 109 |
Max. P | 0.511719 |
Location | 4,756,847 – 4,756,956 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 92.59 |
Mean single sequence MFE | -19.16 |
Consensus MFE | -16.18 |
Energy contribution | -16.96 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.05 |
Mean z-score | -1.87 |
Structure conservation index | 0.84 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.511719 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4756847 109 + 22224390 CAGAAGAGUGCUUUACUUCCCAGGGAGUUCGACUCCUGCUCCUUUUGCUGCACUUGUUUAUUAUUGUUGUGCUAUUUUCUCUUCAUUUUCUUACAUUUCACUACUACUC ..((((((.((...........(((((.....))))).........)).((((...............))))......))))))......................... ( -19.51) >DroSim_CAF1 759 106 + 1 UAGAAGUGGGCUUUACUCCCCAGGGAGUUCGACUCCUGCUCCUUUUGCUGCACUUGUUUAUUAUUGUUGUGCUAUUUUCUCUUCAUUUUCUUACAUUUCACU---ACUC ..(((((((((...........(((((.....))))).........)))((((...............)))).....................))))))...---.... ( -19.61) >DroEre_CAF1 4522 106 + 1 UAGAAAAGGACUUUACUCCCACGGGAGUUCGACUCCUGCUCCUCUUGCUGCACUUGUUUAUUAUUGUUGUGCUAUUUUCUCUUCAUUUUCUUACAUUUCACU---ACUC ..((((((((.((.(((((....)))))..)).))))((.......)).((((...............)))).......................))))...---.... ( -18.36) >consensus UAGAAGAGGGCUUUACUCCCCAGGGAGUUCGACUCCUGCUCCUUUUGCUGCACUUGUUUAUUAUUGUUGUGCUAUUUUCUCUUCAUUUUCUUACAUUUCACU___ACUC ..((((((((............(((((.....)))))((.......)).((((...............))))....))))))))......................... (-16.18 = -16.96 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:04 2006