Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,739,064 – 4,739,180 |
Length | 116 |
Max. P | 0.997091 |
Location | 4,739,064 – 4,739,180 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.49 |
Mean single sequence MFE | -42.26 |
Consensus MFE | -21.30 |
Energy contribution | -20.90 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.35 |
Mean z-score | -2.60 |
Structure conservation index | 0.50 |
SVM decision value | 2.80 |
SVM RNA-class probability | 0.997091 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4739064 116 - 22224390 UAGGGUGAU-UCGAUGGGUGUUUCCAUGGGC---AAAGCCUAAGCGGCUUACGCACCCAAUCAUCAACUCUGCCAUCGUCGAUUGAAGUUCGCUUUGAUUGAGAAGCAGACGAGCGUGAA ..(((((..-((.(((((....))))).)).---.(((((.....)))))...)))))..((((....(((((..((.(((((..(((....)))..))))))).))))).....)))). ( -40.40) >DroSec_CAF1 31901 116 - 1 UGGGUUGAU-UCGAUGGGUGUUUCCAUGGGC---AAAGCCUAAGCAGCUUACGCUCCCAAUCAUCAACUCUGCCAUCGACGGUUGAAGUUCGCUUUGAUUGAGAGGCAGGGGAGCGUGGA ((((((...-((.(((((....))))).)).---..))))))......((((((((((...........(((((.((..((((..(((....)))..)))).))))))))))))))))). ( -45.70) >DroEre_CAF1 35438 114 - 1 UG-GGUGGC-ACGAUGGGUGUUUCCAUGGGC---AAAGCCUAAGCGGCUUAGGG-CCCAAUCAUCAACUCUGCCACCGUCGAUUGAAGUUCGCUUUGAUUGAGAGGCACGGAAGUGUGGA ..-((((((-(.((((((....))))(((((---.(((((.....)))))...)-)))).........))))))))).(((((..(((....)))..)))))...((((....))))... ( -49.30) >DroYak_CAF1 33306 99 - 1 UG-GGUGGU-UCAGUGGGUGUUUCCAUGGGC---AAAGCCUAAGCGGCUUAGGC-CCCAAUCAUCAACUCUACUAGCGUCGAUUGAAGUUCGCUUUGAUUGAUAG--------------- ..-((((((-(..(((((....)))))((((---.(((((.....)))))..))-)).)))))))............((((((..(((....)))..))))))..--------------- ( -34.60) >DroAna_CAF1 43203 106 - 1 UGGGGUGGGGCUGGUGGAUGGUUUUGUUGGCCCAAAAGCCUAAGCCGCUUAGGC-CCC-AUCAU------------CCUCGAUUGGAGUUCCUUUUGAUUGAAAUUCACAGGAGCAUGGA ...((((((((((((((..((((((.........))))))....)))))..)))-)))-))).(------------((......)))((((((..(((.......))).))))))..... ( -41.30) >consensus UGGGGUGGU_UCGAUGGGUGUUUCCAUGGGC___AAAGCCUAAGCGGCUUAGGC_CCCAAUCAUCAACUCUGCCAUCGUCGAUUGAAGUUCGCUUUGAUUGAGAGGCACAGGAGCGUGGA ...(((((.....(((((....)))))(((.....(((((.....))))).....)))..))))).............(((((..(((....)))..))))).................. (-21.30 = -20.90 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:01 2006