Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,704,801 – 4,704,900 |
Length | 99 |
Max. P | 0.500000 |
Location | 4,704,801 – 4,704,900 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 79.78 |
Mean single sequence MFE | -33.85 |
Consensus MFE | -15.73 |
Energy contribution | -16.23 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.12 |
Mean z-score | -2.53 |
Structure conservation index | 0.46 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4704801 99 - 22224390 CGCGAUUGACGUAAUUGUGUGAUACUGGCGAUGGCGUCGAUUUUCGAUUG------------CCUGG-CCAACUUGAUGUUUUCAUUUGG--CGCCAACUAUUACGUAUUUGCA .((((...(((((((.((.......((((...(((((((.....))).))------------))..(-((((..(((.....))).))))--))))))).)))))))..)))). ( -34.81) >DroSec_CAF1 57705 111 - 1 CGCGAUUGACGUAAUUGUGUGCCACUGGUGAUGGCGUCGAUAUGCGAUUGUCGAUUGGGCUGGCUGG-CCACCUUGAUGUUUUCAUUUGG--CGCCAACUAUUACGUAUUUGCA .((((...(((((((.((((((((..(((((..(((((((((......))))....(((.(((....-)))))).)))))..))))))))--)))..)).)))))))..)))). ( -41.80) >DroEre_CAF1 59184 99 - 1 CGCGAUUGACGUAAUUGUGUGAUACUGGCAAUGGCAUCGAUUGUCGAUUG------------GCUGGCCCACCUCGAUGUUUCCAUUUGG--CGCC-ACUAUUACGUAUUUGCA .((((...(((((((.((........(.((((((((.....)))).))))------------.).((((((....((((....)))))))--.)))-)).)))))))..)))). ( -29.20) >DroYak_CAF1 55994 91 - 1 CGCGAUUGACGUAAUUGUGUGAUAUUCGCGAUGGCG---A-UGGCGAU-----------------GG-CCAACUUGAUGUUUUCAUUUGUUUGGCC-ACUAUUAUGUAUUUGCA .((((...(((((((.((.......((((.((....---)-).)))).-----------------((-((((...((((....))))...))))))-)).)))))))..)))). ( -29.60) >consensus CGCGAUUGACGUAAUUGUGUGAUACUGGCGAUGGCGUCGAUUGGCGAUUG____________GCUGG_CCAACUUGAUGUUUUCAUUUGG__CGCC_ACUAUUACGUAUUUGCA .((((...(((((((.(((((...........((((((((.................................))))))))...........)))..)).)))))))..)))). (-15.73 = -16.23 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:35 2006