Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,700,272 – 4,700,381 |
Length | 109 |
Max. P | 0.682451 |
Location | 4,700,272 – 4,700,381 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 70.80 |
Mean single sequence MFE | -24.02 |
Consensus MFE | -6.10 |
Energy contribution | -8.14 |
Covariance contribution | 2.04 |
Combinations/Pair | 1.25 |
Mean z-score | -1.78 |
Structure conservation index | 0.25 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.682451 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4700272 109 - 22224390 ACGAGUGCGGUAAUAAAUCUAUUUAUUUAUAUAGGCCAAUUUACCUGGCCUCG------CGGCCCGAAUUCGC-CCCAACUUUUCGUGCCCCAUCAUCCAUCCAGUUUGUCUGACU---- ..((..(((...((((((......))))))..((((((.......))))))))------)(((.((((.....-........)))).)))...)).......(((.....)))...---- ( -22.52) >DroPse_CAF1 13525 101 - 1 GCGAGUGGGGCAAUAAAUCUAUUUAUUUAUACCUGACA-UCUGCCCCACCGCGGAACCACUCCCCGC--CCGCUCCGAACAUUUCGGC--------UC----UCGUCUAUCUGUCU---- (((.((((((((((((((......))))))........-..)))))))).((((.........))))--.))).((((.....)))).--------..----..............---- ( -27.10) >DroEre_CAF1 54769 105 - 1 ACCAGUGCGGCAAUAAAUCUAUUUAUUUAUAUAGGCCAAUUUACCUGGCCUCG------CACCCCGUAUUGGC-CCCAACUUUUCCUGCCCCAUCAUC----CAGUCUGUCUGUCU---- .(((((((((..((((((......))))))..((((((.......))))))..------....))))))))).-........................----(((.....)))...---- ( -23.60) >DroYak_CAF1 51583 109 - 1 ACGAGUGCGGCAAUAAAUCUAUUUAUUUAUAUAGGCCAAUUUACCUGGCCUCA------CGCCCCGAUUUUGC-CCUAACUUUUCCUGCCCCAUCAUU----CAGUUUGUCUGUCUGUCU ..((((..(((((..(((((((......))).((((((.......))))))..------......))))))))-)...))))............((..----(((.....)))..))... ( -19.50) >DroPer_CAF1 12931 101 - 1 GCGAGUGGGGCAAUAAAUCUAUUUGUUUAUACCUGACA-UCUGCCCCACCGCGGAACCACUCCCCGC--CCGCUCCGAACAUUUCGGC--------UC----UCGUCUAUCUGUCU---- (((.((((((((((((((......))))))........-..)))))))).((((.........))))--.))).((((.....)))).--------..----..............---- ( -27.40) >consensus ACGAGUGCGGCAAUAAAUCUAUUUAUUUAUAUAGGCCAAUUUACCUGGCCUCG______CGCCCCGA_UUCGC_CCCAACUUUUCGUGCCCCAUCAUC____CAGUCUGUCUGUCU____ .((((.((((..((((((......))))))..((((((.......))))))............)))).))))................................................ ( -6.10 = -8.14 + 2.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:28 2006