Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,683,889 – 4,683,986 |
Length | 97 |
Max. P | 0.828802 |
Location | 4,683,889 – 4,683,986 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 82.16 |
Mean single sequence MFE | -25.30 |
Consensus MFE | -22.05 |
Energy contribution | -21.67 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.10 |
Mean z-score | -1.69 |
Structure conservation index | 0.87 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.828802 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4683889 97 + 22224390 CU-------------------UCCCAUUCCCUUUUUCCGCAUUUUCCGCAGCACUUCAGCCGAGUGAAUGAAUCCUUCACAGCGGAGGACACGCACAAAAGCGCAAGCAAGGCAAA ..-------------------........((((.....((.((((((((.((......))...(((((.......))))).))))))))...))......((....)))))).... ( -24.80) >DroSec_CAF1 37552 88 + 1 UU-------------------UCCCAUUUCC---------AUUUUCCGCAGCACUCCAGCCGAGUGAAUGAAUCCUUCACAGCGGAGGACACGCACAAAAGCGCAAGCAAGGCAAA ..-------------------..((......---------.((((((((..(((((.....)))))..(((.....)))..))))))))...........((....))..)).... ( -22.60) >DroEre_CAF1 37914 97 + 1 UU-------------------UCCCUUUCCCACUCUCGGCAUUUUCCGCAGCACUCCAGCCGAGUGAAUGAAUCCUUCACAGCGGAGGACACGCACAAAAGCGCAAGCAAGGCAAA ..-------------------..((((...........((.((((((((..(((((.....)))))..(((.....)))..))))))))...))......((....)))))).... ( -25.00) >DroYak_CAF1 34740 116 + 1 UUCCCAUUCCCUUUUCCCCAUUCCCUCGCCCAUUUUCCGCAUUUUCCGCAGCACUCCAGCCGAGUGAAUGAAUCCUUCACAGCGGAGGGCACGCACAAAAGCGCAAGCAAGGCAAA .........((((..............((((....(((((....((.((.........)).))(((((.......))))).)))))))))..........((....)))))).... ( -28.80) >consensus UU___________________UCCCAUUCCCAUUUUCCGCAUUUUCCGCAGCACUCCAGCCGAGUGAAUGAAUCCUUCACAGCGGAGGACACGCACAAAAGCGCAAGCAAGGCAAA .......................((................((((((((..(((((.....)))))..(((.....)))..))))))))...........((....))..)).... (-22.05 = -21.67 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:05 2006