Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,660,738 – 4,660,858 |
Length | 120 |
Max. P | 0.850680 |
Location | 4,660,738 – 4,660,858 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.25 |
Mean single sequence MFE | -32.16 |
Consensus MFE | -24.28 |
Energy contribution | -24.16 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.09 |
Mean z-score | -2.12 |
Structure conservation index | 0.76 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.850680 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4660738 120 + 22224390 ACAUUAAUUGCUCGCUAGAUGGCGCUGUCAGUGUUCAAUAUGGCGGCCUAAAAACCAAAAUGGCCGUCGUGCAAACCAAUUAAGCGAAAAAGAGAGCAAGAAAGAGAUAUCAGGGUACAA .......(((((((((....)))(((......(((...((((((((((.............))))))))))..)))......)))........))))))..................... ( -31.22) >DroSec_CAF1 22116 120 + 1 ACAUUAAUUGCUCGCUAGAUGGCGCUGUCAGUGUUCAAUAUGGCGGCCUAAAAACCAAAAUGGCCGUCGUGCAAAGCAAUUAAGCGAAAAAGAGAGGAAGAAAGAGAUAUCAGCGUGUAA .......((((.((((.((((.((((.....((((...((((((((((.............))))))))))...))))....)))).....................)))))))).)))) ( -33.37) >DroSim_CAF1 11062 120 + 1 ACAUUAAUUGCUCGCUAGAUGGCGCUGUCAGUGUUCAAUAUGGCGGCCUAAAAACCAAAAUGGCCGUCGUGCAAACCAAUUAAGCGAAAAAGAGAGGAAGAAAGAGCUAUCAGCGUGUAA .......((((.((((.((((((.((.((..(.(((...(((((((((.............)))))))))((...........))........))).).)).)).)))))))))).)))) ( -36.72) >DroEre_CAF1 22962 120 + 1 ACAUUAAUUGCUCGCUAGAUGGCGCUGUCAGUGUUCAAUAUGGCGGCCUAAAAACCAAAAUGGCCGUCGUGCACACCAAUUAAGCGAAAAAGAGAGGAAGCAAGAGAAAGCGAGUUAAAA .........(((((((......((((....((((....((((((((((.............)))))))))).))))......)))).........(....).......)))))))..... ( -33.12) >DroYak_CAF1 18757 120 + 1 ACAUUAAUUGCUCGCUAGAUGGCGCUGUCAGUGUUCAAUAUGGUGGCCUAAAAACCAAAACGGUCGGCGUGCAAAUCAAUUAAGCGAAAAAAAGGGAAAGCAAGGGACAUUGGGGUGAAA .......(..((((((....))).....((((((((..((((.(((((.............))))).))))............((..............))...)))))))))))..).. ( -26.36) >consensus ACAUUAAUUGCUCGCUAGAUGGCGCUGUCAGUGUUCAAUAUGGCGGCCUAAAAACCAAAAUGGCCGUCGUGCAAACCAAUUAAGCGAAAAAGAGAGGAAGAAAGAGAUAUCAGGGUGAAA ...........(((((.((((((((.....)))))...((((((((((.............)))))))))).......))).)))))................................. (-24.28 = -24.16 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:29 2006