Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,657,767 – 4,657,882 |
Length | 115 |
Max. P | 0.727000 |
Location | 4,657,767 – 4,657,882 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.06 |
Mean single sequence MFE | -35.62 |
Consensus MFE | -23.71 |
Energy contribution | -24.48 |
Covariance contribution | 0.77 |
Combinations/Pair | 1.06 |
Mean z-score | -2.19 |
Structure conservation index | 0.67 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506346 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4657767 115 + 22224390 ---GAUAGAGGGCGAG--CGGAGCAAAGUGAAACUUUUCAAUAUCCGCAUCCGCUCAUGAAUAAUAAUUCAUAAUGGCCGUGGCCGCGUGUCAUAAAAACUCGAGCGGCAGGAGCCUCGA ---....((((.(..(--((((......((((....))))...)))))..((((((((((((....)))))).((((((((....))).)))))........)))))).....))))).. ( -39.20) >DroSec_CAF1 19236 115 + 1 ---GAUAGAGUGCGAG--CGGAGCAAAGUGAAACUUUUCAAUAUCCGCAUCCGCUCAUGAAUAAUAAUUUAUAAUGGCCGUGGCCGCGUGUCAUAAAAAGUCGAGCGGCAGGAGCCUCGA ---....(((.((..(--((((......((((....))))...)))))..((((((((((((....)))))).((((((((....))).)))))........)))))).....))))).. ( -37.00) >DroSim_CAF1 7186 115 + 1 ---GAUAGAGGGCGAG--CGGAGCAAAGUGAAACUUUUCAAUAUCCGCAUCCGCUCAUGAAUAAUAAUUUAUAAUGGCCGUGGCCGCGUGUCAUAAAAAGUCGAGCGGCAGGAGCCUCGA ---....(((((((((--((((((....((((....))))......)).)))))))((((((....))))))....)))((.(((((.((.(.......).)).)))))....))))).. ( -37.30) >DroEre_CAF1 20039 114 + 1 ----AGAGAGGGCGAG--CGGAGCAAAGUGAAACUUUUCAAUAUCCGCAUCCGCUCAUGAAUAAUAAUUUAUAAUGGCCGUGGCCGCGUGUCAUAAAAAGUCGAGCGGCAGCAGCCUCGA ----...(((((((((--((((((....((((....))))......)).)))))))((((((....))))))....)))((.(((((.((.(.......).)).))))).))...))).. ( -38.90) >DroYak_CAF1 15752 102 + 1 AAGGAGAGAGAGCGAGCGCGGAGCAAAGUGAAACUUUUCAAUAUCCGCAUCCGCUCAUGAAUAAUAAUUUAUAAUGGCCAUGGCCGCGUGUCAUAAAAAGGC------------------ .........(((((...(((((......((((....))))...)))))...)))))((((((((....))))...(((....))).....))))........------------------ ( -25.70) >consensus ___GAUAGAGGGCGAG__CGGAGCAAAGUGAAACUUUUCAAUAUCCGCAUCCGCUCAUGAAUAAUAAUUUAUAAUGGCCGUGGCCGCGUGUCAUAAAAAGUCGAGCGGCAGGAGCCUCGA .........(((((....((((......((((....))))...))))....)))))((((((....)))))).((((((((....))).)))))......((((..(((....))))))) (-23.71 = -24.48 + 0.77)
Location | 4,657,767 – 4,657,882 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.06 |
Mean single sequence MFE | -33.87 |
Consensus MFE | -23.59 |
Energy contribution | -24.24 |
Covariance contribution | 0.65 |
Combinations/Pair | 1.00 |
Mean z-score | -2.30 |
Structure conservation index | 0.70 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.727000 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4657767 115 - 22224390 UCGAGGCUCCUGCCGCUCGAGUUUUUAUGACACGCGGCCACGGCCAUUAUGAAUUAUUAUUCAUGAGCGGAUGCGGAUAUUGAAAAGUUUCACUUUGCUCCG--CUCGCCCUCUAUC--- ..(((......(((((....(((.....)))..)))))...(((....((((((....))))))(((((((.(((((...((((....)))).)))))))))--)))))))))....--- ( -38.10) >DroSec_CAF1 19236 115 - 1 UCGAGGCUCCUGCCGCUCGACUUUUUAUGACACGCGGCCACGGCCAUUAUAAAUUAUUAUUCAUGAGCGGAUGCGGAUAUUGAAAAGUUUCACUUUGCUCCG--CUCGCACUCUAUC--- (((((((....)))..)))).............(((((....)))...................(((((((.(((((...((((....)))).)))))))))--)))))........--- ( -34.40) >DroSim_CAF1 7186 115 - 1 UCGAGGCUCCUGCCGCUCGACUUUUUAUGACACGCGGCCACGGCCAUUAUAAAUUAUUAUUCAUGAGCGGAUGCGGAUAUUGAAAAGUUUCACUUUGCUCCG--CUCGCCCUCUAUC--- (((((((....)))..)))).............(((((....)))...................(((((((.(((((...((((....)))).)))))))))--)))))........--- ( -33.50) >DroEre_CAF1 20039 114 - 1 UCGAGGCUGCUGCCGCUCGACUUUUUAUGACACGCGGCCACGGCCAUUAUAAAUUAUUAUUCAUGAGCGGAUGCGGAUAUUGAAAAGUUUCACUUUGCUCCG--CUCGCCCUCUCU---- ....(((((..(((((.................)))))..)))))...................(((((((.(((((...((((....)))).)))))))))--))).........---- ( -36.33) >DroYak_CAF1 15752 102 - 1 ------------------GCCUUUUUAUGACACGCGGCCAUGGCCAUUAUAAAUUAUUAUUCAUGAGCGGAUGCGGAUAUUGAAAAGUUUCACUUUGCUCCGCGCUCGCUCUCUCUCCUU ------------------.....(((((((.....(((....))).)))))))...........(((((..((((((......((((.....))))..))))))..)))))......... ( -27.00) >consensus UCGAGGCUCCUGCCGCUCGACUUUUUAUGACACGCGGCCACGGCCAUUAUAAAUUAUUAUUCAUGAGCGGAUGCGGAUAUUGAAAAGUUUCACUUUGCUCCG__CUCGCCCUCUAUC___ (((((((....)))..)))).............(((((....)))...................(((((((.(((((...((((....)))).)))))))))..)))))........... (-23.59 = -24.24 + 0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:26 2006