Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,614,820 – 4,614,919 |
Length | 99 |
Max. P | 0.900078 |
Location | 4,614,820 – 4,614,919 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 59.42 |
Mean single sequence MFE | -26.96 |
Consensus MFE | -13.02 |
Energy contribution | -14.28 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.33 |
Mean z-score | -1.45 |
Structure conservation index | 0.48 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.790487 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4614820 99 + 22224390 ---------------------GACUGUUUACCAUUAAGAUCUUCUUGCGAUUCCAUUUUUCUGUCCACAAGUGCCCAGCAGAGGAAUGUUGUCCUCUUCACCAGCACCAUAAUGGGCAGA ---------------------.............((((.....))))............((((((((...((((...(.((((((......)))))).)....)))).....)))))))) ( -23.50) >DroSec_CAF1 463 92 + 1 ----------------------------GACCACCAAGAUCUACGUCCGAUUCGAUAUUCCUGUCCACAAAUGCCCACGAGAGGAAAGUAAUCCUCUUCACCAGCACCAUGAUGGCCAGA ----------------------------.........((((.......))))........(((.(((((..(((....(((((((......))))))).....)))...)).))).))). ( -18.00) >DroEre_CAF1 447 111 + 1 CUGCUGGAUUCCUGGUAAAGCGACUGUGU---------AUCCUCGUCCGACUCCACAUUCCUGUCGGGCAAUACCCAGUCCAGGAAACCAGUCUUCCUCACCAGCACCAUGACCGGCAGA (((((((..((.((((...(((((((.((---------((....(((((((...........))))))).)))).))))).(((((.......))))).....)))))).))))))))). ( -41.00) >DroYak_CAF1 431 111 + 1 GUGCUGCAUUUCUGGUAAAGCGACUCUUU---------AUACUCAUUCGCUUCCUUAUUCCUGUCUAGCAAUGCCCAGUCAAAGAAUGUGGUCCUUCGCACCAGCACCAUGACGGGCAGA .(((((((.....((..((((((......---------........)))))))).......)))..)))).(((((.((((.....((((((.......)))).))...))))))))).. ( -25.34) >consensus _____________________GACUGUUU_________AUCCUCGUCCGAUUCCAUAUUCCUGUCCACAAAUGCCCAGUAGAGGAAAGUAGUCCUCCUCACCAGCACCAUGACGGGCAGA ............................................................(((((((....(((...((((((((......))))))))....)))......))))))). (-13.02 = -14.28 + 1.25)
Location | 4,614,820 – 4,614,919 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 59.42 |
Mean single sequence MFE | -34.02 |
Consensus MFE | -16.60 |
Energy contribution | -16.73 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.38 |
Mean z-score | -1.63 |
Structure conservation index | 0.49 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.900078 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4614820 99 - 22224390 UCUGCCCAUUAUGGUGCUGGUGAAGAGGACAACAUUCCUCUGCUGGGCACUUGUGGACAGAAAAAUGGAAUCGCAAGAAGAUCUUAAUGGUAAACAGUC--------------------- ((((.((((...((((((.(...((((((......))))))..).)))))).)))).)))).........((....)).....................--------------------- ( -30.00) >DroSec_CAF1 463 92 - 1 UCUGGCCAUCAUGGUGCUGGUGAAGAGGAUUACUUUCCUCUCGUGGGCAUUUGUGGACAGGAAUAUCGAAUCGGACGUAGAUCUUGGUGGUC---------------------------- ((((.((((...((((((..(((.(((((......))))))))..)))))).)))).))))..(((((((((.......))).))))))...---------------------------- ( -29.90) >DroEre_CAF1 447 111 - 1 UCUGCCGGUCAUGGUGCUGGUGAGGAAGACUGGUUUCCUGGACUGGGUAUUGCCCGACAGGAAUGUGGAGUCGGACGAGGAU---------ACACAGUCGCUUUACCAGGAAUCCAGCAG .((((.((......(.(((((((((..(((((..((((((...((((.....)))).))))))((((...((....))...)---------)))))))).))))))))).)..)).)))) ( -42.90) >DroYak_CAF1 431 111 - 1 UCUGCCCGUCAUGGUGCUGGUGCGAAGGACCACAUUCUUUGACUGGGCAUUGCUAGACAGGAAUAAGGAAGCGAAUGAGUAU---------AAAGAGUCGCUUUACCAGAAAUGCAGCAC ..(((((((((.((((.((((.(....)))))))))...)))).))))).((((.(.((........(((((((.(......---------..)...)))))))........))))))). ( -33.29) >consensus UCUGCCCAUCAUGGUGCUGGUGAAGAGGACUACAUUCCUCGACUGGGCAUUGCUGGACAGGAAUAUGGAAUCGGACGAAGAU_________AAACAGUC_____________________ ((((.((((...((((((.(...((((((......))))))..).)))))).)))).))))........................................................... (-16.60 = -16.73 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:43 2006