Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,612,239 – 4,612,359 |
Length | 120 |
Max. P | 0.872449 |
Location | 4,612,239 – 4,612,359 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 99.17 |
Mean single sequence MFE | -30.02 |
Consensus MFE | -29.31 |
Energy contribution | -29.12 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.03 |
Mean z-score | -2.33 |
Structure conservation index | 0.98 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.872449 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4612239 120 - 22224390 GUGGCUGGUGAAAAUAAGCAGGAAACUGGAAAUUACAAAUGAUACGGAAAUAAUGCGAUAUCAUGAAUCAUUUUUACGAGAAUCGAGACUUUGAUUCUCAGGGGCAAACGAUUGGCAAGG ...(((.((((((((...(((....)))..........((((((((.(.....).)).)))))).....))))))))(((((((((....)))))))))...)))............... ( -29.80) >DroSec_CAF1 36304 120 - 1 GUGGCUGGUGAAAAUAAGCAGGAAACUGGAAAUUACAAAUGAUACGGAAAUAAUGCGAUAUCAUGAAUCAUUUUUACGAGAAUCGAGACUUUGAUUCUCAGGGGCUAACGAUUGGCAAGG .(((((.((((((((...(((....)))..........((((((((.(.....).)).)))))).....))))))))(((((((((....)))))))))...)))))............. ( -31.70) >DroEre_CAF1 39209 120 - 1 GUGGCUGGUGAAAAUAAGCAGGAAACUGGAAAUUACAAAUGAUACGGAAAUAAUGCGAUAUCAUGAAUCAUUUUUACGAGAAUCGAGACUUUGAUUCUCAGGGGCAAACGAUUGGCAAGG ...(((.((((((((...(((....)))..........((((((((.(.....).)).)))))).....))))))))(((((((((....)))))))))...)))............... ( -29.80) >DroYak_CAF1 38426 120 - 1 GUGGCUGGUGAAAAUAAGCAGGAAACUGGAAAUUACAAAUGAUACGGAAAUAAUGCGAUAUCAUGAAUCAUUUUUAUGAGAAUCGAGACUUUGAUUCUCAGGGGCAAACGAUUGGCAAGG ...((..((((((((...(((....)))..........((((((((.(.....).)).)))))).....)))))).((((((((((....))))))))))..........))..)).... ( -28.80) >consensus GUGGCUGGUGAAAAUAAGCAGGAAACUGGAAAUUACAAAUGAUACGGAAAUAAUGCGAUAUCAUGAAUCAUUUUUACGAGAAUCGAGACUUUGAUUCUCAGGGGCAAACGAUUGGCAAGG ...(((.((((((((...(((....)))..........((((((((.(.....).)).)))))).....))))))))(((((((((....)))))))))...)))............... (-29.31 = -29.12 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:40 2006