Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,610,802 – 4,610,922 |
Length | 120 |
Max. P | 0.648544 |
Location | 4,610,802 – 4,610,922 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 70.28 |
Mean single sequence MFE | -32.40 |
Consensus MFE | -16.61 |
Energy contribution | -17.70 |
Covariance contribution | 1.09 |
Combinations/Pair | 1.09 |
Mean z-score | -1.83 |
Structure conservation index | 0.51 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.648544 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4610802 120 + 22224390 AUCCAUUUGGCAAAGUUAUGGCGUCUGGAAACUCAGGUUUGUGUACUUCUUCGGGUUUUAGGCACCUAACCCACUUUCGGUACAUCAUAACUGGGCUAAAACUCGUCAGAUCAUGGAAUG .((((((((((..(((((((..((((((((.....((((.((((...((....))......))))..))))...)))))).))..)))))))..))))))..((....))...))))... ( -34.90) >DroSec_CAF1 34902 120 + 1 AUCCAUUUGGCCAAGUUAUGGCGUCUGGGAUCUCAGGUAUGUGUACUUCUUCCGGUUUUGGCCACCUAACCCAGGAUUGGUACAUCAUAAAUCGGGUAAAAAUAGUCAGAUCAUGGAAUG .(((((...((((.....))))((((((.((((.(..((((((((((...(((((((..((...)).))))..)))..)))))).))))..).))))........)))))).)))))... ( -32.10) >DroYak_CAF1 37373 91 + 1 GUUCAUUUCUCCAAGUUAUGGCGUCUGGAACUUCAGGCUUGUGUACUUC-----------------------------GGUACCUCAUAACUUGGCUUAAAAUAGUCGGAUAGUGGAAUG .((((((..((((((((((((.((((((....))))))....((((...-----------------------------.)))).)))))))))((((......))))))).))))))... ( -30.20) >consensus AUCCAUUUGGCCAAGUUAUGGCGUCUGGAAACUCAGGUUUGUGUACUUCUUC_GGUUUU_G_CACCUAACCCA___U_GGUACAUCAUAACUCGGCUAAAAAUAGUCAGAUCAUGGAAUG .(((((.......(((((((..((((((....))))))..(((((((.....(((((..........)))))......)))))))))))))).(((........))).....)))))... (-16.61 = -17.70 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:36 2006