Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,595,639 – 4,595,749 |
Length | 110 |
Max. P | 0.578887 |
Location | 4,595,639 – 4,595,749 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 88.48 |
Mean single sequence MFE | -27.64 |
Consensus MFE | -21.13 |
Energy contribution | -21.07 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.15 |
Mean z-score | -1.49 |
Structure conservation index | 0.76 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.578887 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4595639 110 + 22224390 UUUAUUCCGACCUCGCAACUGCCUUGGCUUAUAAUAAUAAUGAAAAUCAAGGAAUAUGUAGCGAACGAUGUGGCCAAGGCCAUGUGACCUGCAUAUUAGCAGGGCAACUG ............((((.((..(((((..((.............))..))))).....)).))))...(((((((....)))))))..(((((......)))))....... ( -29.62) >DroSec_CAF1 19368 110 + 1 UUUAUUCCGACCUCGCAGCAGCCUUGGCUUAUAAUAAUAAUGAAAAUCAAGGAAUAUGUAGCGAACGAUGUGGCCAAGGCCAUGUGACCUGCAUUUAAGCAGGGCAACUG ............((((.(((.(((((..((.............))..)))))....))).))))...(((((((....)))))))..(((((......)))))....... ( -32.12) >DroEre_CAF1 22820 100 + 1 UUUAUUCCGACCUCGGGAAUGCCUUGGCUUAUAAUAAUAAUGAAAAUCAAGGAAUAUGUAGCGAACGAUGUGGCCAAGGCCAUAUGACCUGCAUUUA-GCC--------- ....(((((....)))))...(((((..((.............))..)))))...((((((.(....(((((((....)))))))..)))))))...-...--------- ( -24.72) >DroYak_CAF1 20220 101 + 1 UUUAUUCCGACCUCGGAAAUGCCUUGGCUUAUAAUAAUAAUGAAAAUCAAGGAAUAUGUAGCGAACGAUGCGGCCAAGGCCACAUGACCUGCAUUUAAGCA--------- ....(((((....)))))..(((((((((...........((.....))...........(((.....))))))))))))..........((......)).--------- ( -24.10) >consensus UUUAUUCCGACCUCGCAAAUGCCUUGGCUUAUAAUAAUAAUGAAAAUCAAGGAAUAUGUAGCGAACGAUGUGGCCAAGGCCAUAUGACCUGCAUUUAAGCA_________ ....(((((....)))))...(((((..((.............))..)))))...((((((.(....(((((((....)))))))..)))))))................ (-21.13 = -21.07 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:23 2006