Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,594,257 – 4,594,356 |
Length | 99 |
Max. P | 0.631982 |
Location | 4,594,257 – 4,594,356 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 89.14 |
Mean single sequence MFE | -29.88 |
Consensus MFE | -25.99 |
Energy contribution | -25.77 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -1.52 |
Structure conservation index | 0.87 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.631982 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4594257 99 + 22224390 CAUGUUCAAUGCUCAUGAUUGAAAGUUUGUGCUUUGGCGGUUUUCGUUGGCA--GUA-AACCGCCAACCGCUAAGCCCACACUUUCCCUU--UUGGAAAAGCGG .........((((.......((((((.((.((((.((((((......((((.--...-....)))))))))))))).)).))))))((..--..))...)))). ( -29.40) >DroPse_CAF1 22465 92 + 1 CAUGUUCAAUGCUCAUGAUUGAAAGUUUGUGCUGUGGCGGUUUUCGUUGGCA--GUA-GACCGCCAACCGCUAAGCCCACACUUUCCGC---------AAUCGU ..............((((((((((((.((.(((.(((((((......((((.--...-....)))))))))))))).)).))))))...---------)))))) ( -28.00) >DroSec_CAF1 18081 101 + 1 CAUGUUCAAUGCUCAUGAUUGAAAGUUUGUGCUUUGGCGGUUUUCGUUGGCAGAGUA-AACCGCCAACCGCUAAGCCCACACUUUCCCUU--UUGGAAAAGCGG .........((((.......((((((.((.((((.((((((......((((.(....-..).)))))))))))))).)).))))))((..--..))...)))). ( -28.80) >DroEre_CAF1 21407 97 + 1 CAUGUUCAAUGCUCAUGAUUGAAAGUUUGUGCUUUGGCGGUUUGCGUUGGCA--GUA-AACCGCCGACCGCUAAGCCCACACUUUCCU----UCGGAAAAGCGG .........((((..(((..((((((.((.(((((((((((((((.......--)))-)))))))))......))).)).))))))..----)))....)))). ( -34.40) >DroYak_CAF1 18855 102 + 1 CAUGUUCAAUGCUCAUGAUUGAAAGUUUGUGCUUUGGCGGUUUUCGUUGGCA--GCAAAACCGCCGACCGCUAAGCCCACACUUUCCCCUGCUCGGAAAAGCGG ((((.........))))...((((((.((.((((((((((((((.((.....--)))))))))))))......))).)).))))))..(((((......))))) ( -30.70) >DroPer_CAF1 23263 92 + 1 CAUGUUCAAUGCUCAUGAUUGAAAGUUUGUGCUGUGGCGGUUUUCGCUGGCA--GUA-GACCGCCAACCGCUAAGCCCACACUUUCCGC---------AAUCGU ..............((((((((((((.((.(((.(((((((......((((.--...-....)))))))))))))).)).))))))...---------)))))) ( -28.00) >consensus CAUGUUCAAUGCUCAUGAUUGAAAGUUUGUGCUUUGGCGGUUUUCGUUGGCA__GUA_AACCGCCAACCGCUAAGCCCACACUUUCCCC___U_GGAAAAGCGG ((((.........))))...((((((.((.(((.(((((((......((((...........)))))))))))))).)).)))))).................. (-25.99 = -25.77 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:21 2006