Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 572,120 – 572,227 |
Length | 107 |
Max. P | 0.945533 |
Location | 572,120 – 572,227 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 92.45 |
Mean single sequence MFE | -36.27 |
Consensus MFE | -27.95 |
Energy contribution | -27.73 |
Covariance contribution | -0.21 |
Combinations/Pair | 1.16 |
Mean z-score | -2.64 |
Structure conservation index | 0.77 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.683445 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 572120 107 + 22224390 AGGAUGGAGAAGGGGUCGGAAGGUAGGGGAAAGUAGCUGAGGAGGAGCCACUACUGAAGCUGCAGAAGCUGCAGCGGCCGCUGAUAAAGCAGCUUGACAGCUGCGAG ..........((.((((....(((((.((....(..(....)..)..)).)))))...(((((((...))))))))))).))......((((((....))))))... ( -36.00) >DroSec_CAF1 35895 104 + 1 AGGAUGGAGAAGGGGCUGGGGAGUAGG-GAAAGGGGCCGAGGAGGAGCCACUACUGAAGCUACAGAAGCUGCAGCGGCCGCUGAUAAAGCAGCUUGACAGC--CGAG .............(((((..((((...-......(((((.((.....))....(((.((((.....)))).))))))))(((.....))).))))..))))--)... ( -36.40) >DroSim_CAF1 35433 104 + 1 AGGAUGGAGAAGGGGCUGGGGAGUAGG-GAAAGGGGCCGAGGAGGAGCCACUACUGAAGCUACAGAAGCUGCAGCGGCCGCUGAUAAAGCAGCUUGACAGC--CGAG .............(((((..((((...-......(((((.((.....))....(((.((((.....)))).))))))))(((.....))).))))..))))--)... ( -36.40) >consensus AGGAUGGAGAAGGGGCUGGGGAGUAGG_GAAAGGGGCCGAGGAGGAGCCACUACUGAAGCUACAGAAGCUGCAGCGGCCGCUGAUAAAGCAGCUUGACAGC__CGAG ..............((((..((((..........(((((.((.....))....(((.((((.....)))).))))))))(((.....))).))))..))))...... (-27.95 = -27.73 + -0.21)
Location | 572,120 – 572,227 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 92.45 |
Mean single sequence MFE | -30.93 |
Consensus MFE | -26.12 |
Energy contribution | -25.90 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -3.48 |
Structure conservation index | 0.84 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.945533 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 572120 107 - 22224390 CUCGCAGCUGUCAAGCUGCUUUAUCAGCGGCCGCUGCAGCUUCUGCAGCUUCAGUAGUGGCUCCUCCUCAGCUACUUUCCCCUACCUUCCGACCCCUUCUCCAUCCU ...((((((....))))))........(((..(((((((...)))))))......(((((((.......)))))))............)))................ ( -31.20) >DroSec_CAF1 35895 104 - 1 CUCG--GCUGUCAAGCUGCUUUAUCAGCGGCCGCUGCAGCUUCUGUAGCUUCAGUAGUGGCUCCUCCUCGGCCCCUUUC-CCUACUCCCCAGCCCCUUCUCCAUCCU ...(--((((....((((......))))(((((((((((...))))))).......(.((.....)).)))))......-.........)))))............. ( -30.80) >DroSim_CAF1 35433 104 - 1 CUCG--GCUGUCAAGCUGCUUUAUCAGCGGCCGCUGCAGCUUCUGUAGCUUCAGUAGUGGCUCCUCCUCGGCCCCUUUC-CCUACUCCCCAGCCCCUUCUCCAUCCU ...(--((((....((((......))))(((((((((((...))))))).......(.((.....)).)))))......-.........)))))............. ( -30.80) >consensus CUCG__GCUGUCAAGCUGCUUUAUCAGCGGCCGCUGCAGCUUCUGUAGCUUCAGUAGUGGCUCCUCCUCGGCCCCUUUC_CCUACUCCCCAGCCCCUUCUCCAUCCU ......((((....((((......))))(((((((((((((.....))))...)))))))))......))))................................... (-26.12 = -25.90 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:32 2006