Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,541,000 – 4,541,100 |
Length | 100 |
Max. P | 0.561107 |
Location | 4,541,000 – 4,541,100 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 69.55 |
Mean single sequence MFE | -32.60 |
Consensus MFE | -14.54 |
Energy contribution | -18.60 |
Covariance contribution | 4.06 |
Combinations/Pair | 1.14 |
Mean z-score | -1.92 |
Structure conservation index | 0.45 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.561107 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4541000 100 + 22224390 UGUUUUUGCCAUGCCUCAAAACGUGUCCAGGCAUAUUUUCCGGGGCUCAAAUGCCA---------UU---CCAGGUGUAGCCUAAUUGCAGUCG--GUGCAGUUGGUCU-GGACA .(((((.((...))...))))).(((((((((..........(((((...(((((.---------..---...))))))))))(((((((....--.))))))).))))-))))) ( -31.70) >DroSec_CAF1 3958 105 + 1 UCUUUUUGUCAUGCCUCAAAACGUGUCCAGGCAUAUUUUCCGGGGCUCAAAUGCCA---------UCCAGCCAGGUGUAGCCUAAUUGCAGUCGUCGUGCAGUUGGUCUUGGAC- ....((((....(((((((((..(((....)))..))))..))))).)))).....---------((((((((((.....)))(((((((.......))))))))))..)))).- ( -27.50) >DroEre_CAF1 9288 106 + 1 --CUCUUUCCAUGCCUUAAAACGUGUCCAGGCAUAUUUGCUGGGGCUCAAAAACCUGGGUACAUUUU---CCAGGUGUGGCCUAAAUGGUUAGG--AGGCAGUUGGUCU-GGAC- --.(((..(((((((((..(((....((((.((....))))))(((.((...(((((((.......)---)))))).)))))......)))..)--)))))..)))...-))).- ( -38.70) >DroYak_CAF1 10026 97 + 1 UCUUUUUUCCAUAACUUAAAACGUGUCCUGGCUUAUUUGCCGGGGCUCAAAAGCCUGGGCACAUUUU---CCAGAAGUGGCCCAAAAA-------------AAAUGUCU-GGAA- ......(((((...........(.((((((((......)))))))).).......(((((.((((((---...)))))))))))....-------------.......)-))))- ( -32.50) >consensus UCUUUUUGCCAUGCCUCAAAACGUGUCCAGGCAUAUUUGCCGGGGCUCAAAAGCCA_________UU___CCAGGUGUAGCCUAAAUGCAGUCG__GUGCAGUUGGUCU_GGAC_ ........................((((((((..........(((((...((((((((............)))))))))))))(((((((.......))))))).)))).)))). (-14.54 = -18.60 + 4.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:04 2006