Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,524,222 – 4,524,322 |
Length | 100 |
Max. P | 0.576632 |
Location | 4,524,222 – 4,524,322 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 85.01 |
Mean single sequence MFE | -27.62 |
Consensus MFE | -18.36 |
Energy contribution | -18.43 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.14 |
Mean z-score | -1.63 |
Structure conservation index | 0.66 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.576632 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4524222 100 - 22224390 AUUUCAAUUUUCCAUUGCUAGCUGUACAUUGUGUGCGAGUGGGAUGCAGCAUAACGGAGAGUCGAACGAUCUCACCC-----UCUCCCGCUCCCGCUCUCUCACU------ ...............(((.....)))....(((.(.((((((((.((.(.....)((((((..((......))...)-----))))).)))))))))).).))).------ ( -28.40) >DroSec_CAF1 19391 98 - 1 UUUUCAAUUUUCCAUCGCUAGCUGUACAUUGUGUGCGAGUGGGAUGCAGCAUAACGGAGAGUCGAACGAUCUCACCC-----UCUCCCGCAUCCACUCUCU--CU------ .......................((((.....))))((((((.((((.(.....)((((((..((......))...)-----))))).))))))))))...--..------ ( -25.80) >DroSim_CAF1 11844 98 - 1 UUUUCAAUUUUCCAUCGCUAGCUGUACAUUGUGUGCGAGUGGGAUGCAGCAUUACGGAGAGUCGAACGAUCUCACCC-----UCUCCCGCAUCCGCUCUCU--CU------ .......................((((.....))))((((((.((((.(.....)((((((..((......))...)-----))))).))))))))))...--..------ ( -25.40) >DroYak_CAF1 20374 108 - 1 UUUUACAUUUUCCAUUGCUAGCUGUACAUUGUGUGCGAGCGGGAUGGAGCAUGACGGAGAGUCAGACGAUCUCACCCCGCUCUCUUUCUCCUCCUCUC-CU--CUCCCCAU ....................(((((((.....)))).)))((((.((((...((.((((((..(((((.........)).)))..))))))))..)))-).--.))))... ( -30.90) >consensus UUUUCAAUUUUCCAUCGCUAGCUGUACAUUGUGUGCGAGUGGGAUGCAGCAUAACGGAGAGUCGAACGAUCUCACCC_____UCUCCCGCAUCCGCUCUCU__CU______ .......................((((.....))))(((((((.(((.(.....)((.(((((....)).))).))............))))))))))............. (-18.36 = -18.43 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:53 2006