Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,481,172 – 4,481,277 |
Length | 105 |
Max. P | 0.526554 |
Location | 4,481,172 – 4,481,277 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.22 |
Mean single sequence MFE | -28.98 |
Consensus MFE | -22.35 |
Energy contribution | -22.35 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.87 |
Structure conservation index | 0.77 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.526554 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4481172 105 - 22224390 UCGCCACCGAUAGGCGAUAACUUUCGAUAUCAGGUGGCUCAAUUUGUUUUCGAAUGAUUUUAGCGUCACAUC--------------AAACUAGUUUCUA-ACGCUGCUUCCAUGUGGCGA ..((((((((((..(((......))).)))).))))))(((.((((....)))))))......((((((((.--------------.((.((((.....-..)))).))..)))))))). ( -31.90) >DroSec_CAF1 82576 120 - 1 UCGCCACCGAUAGGCAAAAAUUUUCGAUAUCAGUUUGUUUAAUUUGUUUUCGAAUGAUUUUAGCGUCACAUCAAAAUAGUCACGUCAAACUAGUCUCUAAACGCUGCUUCCAUGUGGCGA (((((((....((((.(((((((((((...(((..........)))...))))).))))))(((((..........((((........))))........)))))))))....))))))) ( -28.27) >DroSim_CAF1 76088 120 - 1 UCGCCACCGAUAGGCAAUAAUUUUCGAUAUCAGUUGGUUUAAUUUGUUUUCGAAUGAUUUUAGCGUCACAUCAAAAUAGUCACGUCAAACUAGUCUCUAAACGCUGCUUCCAUGUGGCGA ((((((((((.((((((......(((((....)))))......))))))))).(((....((((((..........((((........))))........))))))....)))))))))) ( -26.77) >consensus UCGCCACCGAUAGGCAAUAAUUUUCGAUAUCAGUUGGUUUAAUUUGUUUUCGAAUGAUUUUAGCGUCACAUCAAAAUAGUCACGUCAAACUAGUCUCUAAACGCUGCUUCCAUGUGGCGA (((((((....((((.......(((((...(((..........)))...))))).......(((((..................................)))))))))....))))))) (-22.35 = -22.35 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:44 2006