Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,469,594 – 4,469,713 |
Length | 119 |
Max. P | 0.633289 |
Location | 4,469,594 – 4,469,713 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 96.08 |
Mean single sequence MFE | -43.27 |
Consensus MFE | -38.14 |
Energy contribution | -38.03 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.06 |
Mean z-score | -1.80 |
Structure conservation index | 0.88 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.520638 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4469594 119 + 22224390 CCUCAAAGAAGUGGCCAGUUCACCGUUCAAGGAUGAGUCCCAGGACCUGGUUCCAGUGGCCAAGCUGGUGGACAAUGCCACCAGCCAGAACAUGGGCUUCAACAGCUAUUUCCGGCCCA ..........(..(((((.(((((......)).)))(((....))))))))..).(.((((..((((((((......))))))))..(((....((((.....))))..))).))))). ( -42.80) >DroSec_CAF1 71236 119 + 1 CCUCAAAGAAGUGGCCAGUUCGCCGUUCAAGGAUGAGUCCCAGGACCUGGUUCCAGUGGCCAAGCUGGUGGACAAUGCCACCAGCCAGAACAUGGGCUUCAACAGCUAUUUCCGGCCCA ..........(.((((.(((((((((((..(((....)))..))))(((....))).)))...((((((((......))))))))..))))...((((.....))))......))))). ( -44.50) >DroYak_CAF1 72097 119 + 1 CCUCAAAGAAGUGGCCAGUUCGCCGUUCAAGGAUGAGUCGCAGGACCUGGUGCCGGUGUCCAAGCUGGUGGACAAUGCCACCAGCCAGAACAUGGGCUUCAACAGCUAUUUUCGACCCA .......(((((..(((((((((..((((....))))..)).(((((((....))).))))..((((((((......))))))))..)))).))))))))................... ( -42.50) >consensus CCUCAAAGAAGUGGCCAGUUCGCCGUUCAAGGAUGAGUCCCAGGACCUGGUUCCAGUGGCCAAGCUGGUGGACAAUGCCACCAGCCAGAACAUGGGCUUCAACAGCUAUUUCCGGCCCA .......((((((((.......((......)).((((.((((((.((((....))).).))..((((((((......)))))))).......)))).))))...))))))))....... (-38.14 = -38.03 + -0.11)
Location | 4,469,594 – 4,469,713 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 96.08 |
Mean single sequence MFE | -47.17 |
Consensus MFE | -43.01 |
Energy contribution | -42.90 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.06 |
Mean z-score | -1.82 |
Structure conservation index | 0.91 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633289 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4469594 119 - 22224390 UGGGCCGGAAAUAGCUGUUGAAGCCCAUGUUCUGGCUGGUGGCAUUGUCCACCAGCUUGGCCACUGGAACCAGGUCCUGGGACUCAUCCUUGAACGGUGAACUGGCCACUUCUUUGAGG ..((((((.....((((((.(((.(((((..(.(((((((((......))))))))).)..)).))).....((((....))))....))).))))))...))))))............ ( -47.10) >DroSec_CAF1 71236 119 - 1 UGGGCCGGAAAUAGCUGUUGAAGCCCAUGUUCUGGCUGGUGGCAUUGUCCACCAGCUUGGCCACUGGAACCAGGUCCUGGGACUCAUCCUUGAACGGCGAACUGGCCACUUCUUUGAGG ..((((((.....((((((.(((.(((((..(.(((((((((......))))))))).)..)).))).....((((....))))....))).))))))...))))))............ ( -48.70) >DroYak_CAF1 72097 119 - 1 UGGGUCGAAAAUAGCUGUUGAAGCCCAUGUUCUGGCUGGUGGCAUUGUCCACCAGCUUGGACACCGGCACCAGGUCCUGCGACUCAUCCUUGAACGGCGAACUGGCCACUUCUUUGAGG (((((((.....(.(((.....(((..(((((.(((((((((......))))))))).)))))..)))..))).)....))))))).(((..((.(((......))).....))..))) ( -45.70) >consensus UGGGCCGGAAAUAGCUGUUGAAGCCCAUGUUCUGGCUGGUGGCAUUGUCCACCAGCUUGGCCACUGGAACCAGGUCCUGGGACUCAUCCUUGAACGGCGAACUGGCCACUUCUUUGAGG ..((((((.....((((((.(((((..((.((.(((((((((......))))))))).)).))..)).....((((....))))....))).))))))...))))))............ (-43.01 = -42.90 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:38 2006