Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,466,332 – 4,466,425 |
Length | 93 |
Max. P | 0.981799 |
Location | 4,466,332 – 4,466,425 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.58 |
Mean single sequence MFE | -19.73 |
Consensus MFE | -14.14 |
Energy contribution | -14.25 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -2.39 |
Structure conservation index | 0.72 |
SVM decision value | 1.90 |
SVM RNA-class probability | 0.981799 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4466332 93 + 22224390 UUACUCACUCACCUGUUCUUCGUUUCUCCCACCAUC-------------------------CAAAUUGAA--ACUAUAAACAGGUGCUAUCCUCGGCUUCAUCCCUGGACAGACACGUGC .....(((.((((((((..(.(((((..........-------------------------......)))--)).)..))))))))((.(((..((......))..))).))....))). ( -21.39) >DroSec_CAF1 67991 93 + 1 UUACUCACUCACCUGUUCUUCGUUUCUCCCACCAUC-------------------------AAAAUUGGA--ACUAUAAACAGGUGCUAUCCUCGGCUUCAUCCCUGGACAGACACGUGC .....(((.((((((((..(.(((((..........-------------------------......)))--)).)..))))))))((.(((..((......))..))).))....))). ( -20.89) >DroYak_CAF1 68823 120 + 1 UUACUCACUCACCUGUUCUUCGUUUCUCCCGCCUUCUCUCUCUCUCUCUCUUCGCCCCGCACAAAUUGAUGCCCUACAAACAGGUGCUAUCCUCGGCUUCAUCCCUGGACAGACACGUGC .....(((.((((((((.............((.....................))...((((.....).)))......))))))))((.(((..((......))..))).))....))). ( -16.90) >consensus UUACUCACUCACCUGUUCUUCGUUUCUCCCACCAUC_________________________CAAAUUGAA__ACUAUAAACAGGUGCUAUCCUCGGCUUCAUCCCUGGACAGACACGUGC .....(((.((((((((......(((.........................................)))........))))))))((.(((..((......))..))).))....))). (-14.14 = -14.25 + 0.11)
Location | 4,466,332 – 4,466,425 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.58 |
Mean single sequence MFE | -28.70 |
Consensus MFE | -23.35 |
Energy contribution | -23.79 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.04 |
Mean z-score | -2.12 |
Structure conservation index | 0.81 |
SVM decision value | 1.75 |
SVM RNA-class probability | 0.975363 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4466332 93 - 22224390 GCACGUGUCUGUCCAGGGAUGAAGCCGAGGAUAGCACCUGUUUAUAGU--UUCAAUUUG-------------------------GAUGGUGGGAGAAACGAAGAACAGGUGAGUGAGUAA .(((....((((((..((......))..))))))(((((((((...((--(((..((..-------------------------......))..)))))...))))))))).)))..... ( -29.00) >DroSec_CAF1 67991 93 - 1 GCACGUGUCUGUCCAGGGAUGAAGCCGAGGAUAGCACCUGUUUAUAGU--UCCAAUUUU-------------------------GAUGGUGGGAGAAACGAAGAACAGGUGAGUGAGUAA .(((....((((((..((......))..))))))(((((((((...((--(((.(((..-------------------------...))).)))...))...))))))))).)))..... ( -27.40) >DroYak_CAF1 68823 120 - 1 GCACGUGUCUGUCCAGGGAUGAAGCCGAGGAUAGCACCUGUUUGUAGGGCAUCAAUUUGUGCGGGGCGAAGAGAGAGAGAGAGAGAAGGCGGGAGAAACGAAGAACAGGUGAGUGAGUAA .(((....((((((..((......))..))))))(((((((((((.(.(((......))).)...))......................((.......))..))))))))).)))..... ( -29.70) >consensus GCACGUGUCUGUCCAGGGAUGAAGCCGAGGAUAGCACCUGUUUAUAGU__UUCAAUUUG_________________________GAUGGUGGGAGAAACGAAGAACAGGUGAGUGAGUAA .(((....((((((..((......))..))))))(((((((((...((..(((......................................)))...))...))))))))).)))..... (-23.35 = -23.79 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:27 2006