Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,460,533 – 4,460,650 |
Length | 117 |
Max. P | 0.905813 |
Location | 4,460,533 – 4,460,650 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -33.87 |
Consensus MFE | -29.90 |
Energy contribution | -30.57 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.79 |
Structure conservation index | 0.88 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.905813 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4460533 117 + 22224390 U-UUUCAAUGUUGAAGAGCAGCGCGUGGGAUUUUCAGUUGGCAGCAUUGUUUGCUAUUUGUUUUAUGCUAAGCUAAAUGCUAACUAAAUGUUGGCAAUUAAAUGUUAAUGUUGCCCCU-- (-(((((....))))))((((((((((((((....(((..((......))..)))....))))))))).....(((.(((((((.....))))))).))).........)))))....-- ( -30.00) >DroEre_CAF1 65549 120 + 1 UUUUUCAAUGUUGAAGAGCAGCGCGUGGGAUUUUCAGUUGCCAGCAUUGUUAGCUAUUUGUUUUAUGCUAAGCUAAAUGCUAACUAAAUGUUGGCAAUUAAAUGUUAAUGUUGCCCCUUC ............((((.((((((..(((.((((..(((((((((((((((((((.((((((((......)))).))))))))))..))))))))))))))))).))).))))))..)))) ( -38.10) >DroYak_CAF1 62820 120 + 1 UUUUUCAAUGUUGAAGAGCAGCGCGUGGGAUUUUCAGUUGGCAGCAUUGUUAGCUAUUUGUUUUAUGCUAAGCUAAAUGCUAACUAAAUGUUGGCAAUUAAAUGUUAAUGUUGCCCCUUC ............((((.((((((..(((.((((..(((((.(((((((((((((.((((((((......)))).))))))))))..))))))).))))))))).))).))))))..)))) ( -33.50) >consensus UUUUUCAAUGUUGAAGAGCAGCGCGUGGGAUUUUCAGUUGGCAGCAUUGUUAGCUAUUUGUUUUAUGCUAAGCUAAAUGCUAACUAAAUGUUGGCAAUUAAAUGUUAAUGUUGCCCCUUC .((((((....))))))((((((..(((.((((..(((((.(((((((((((((.((((((((......)))).))))))))))..))))))).))))))))).))).))))))...... (-29.90 = -30.57 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:10 2006