Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 553,381 – 553,472 |
Length | 91 |
Max. P | 0.999065 |
Location | 553,381 – 553,472 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 83.58 |
Mean single sequence MFE | -14.20 |
Consensus MFE | -15.22 |
Energy contribution | -14.67 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.12 |
Mean z-score | -1.06 |
Structure conservation index | 1.07 |
SVM decision value | 3.35 |
SVM RNA-class probability | 0.999065 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 553381 91 + 22224390 UUAAAAUUAGAAAUUGCUUAUUAAGUAAUACUUUAAUACAAUGACCUAAUUGACAAUGCAAUGAAAUUCUUUGCAACAUAGAUAAGAAGGG ....((((((..((((..(((((((......)))))))))))...)))))).....(((((.(.....).)))))................ ( -11.20) >DroSec_CAF1 18031 82 + 1 UUGAAAUUAGAAAUCGCUCAUUAAGU-----CUUAAUGUAGUGACCUAAUUGACAGUGCAAUGAAAUUCUUUGCAAAAUUGAAAAAA---- (((.((((((...((((((((((...-----..))))).))))).))))))..)))(((((.(.....).)))))............---- ( -15.40) >DroSim_CAF1 16493 86 + 1 UUGAAAUUAGAAAUCGCUCAUUAAGU-----CUUAAUGUAGUGACCUAAUUGACAGUGCAAUGAAAUUCUUUGCAAAAUUCAUAAGAAGGG .............((((((((((...-----..))))).)))))(((...(((...(((((.(.....).)))))....))).....))). ( -16.00) >consensus UUGAAAUUAGAAAUCGCUCAUUAAGU_____CUUAAUGUAGUGACCUAAUUGACAGUGCAAUGAAAUUCUUUGCAAAAUUGAUAAGAAGGG ....((((((...((((((((((((......))))))).))))).)))))).....(((((.(.....).)))))................ (-15.22 = -14.67 + -0.55)
Location | 553,381 – 553,472 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 83.58 |
Mean single sequence MFE | -12.73 |
Consensus MFE | -11.46 |
Energy contribution | -11.47 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.08 |
Mean z-score | -1.06 |
Structure conservation index | 0.90 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.632397 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 553381 91 - 22224390 CCCUUCUUAUCUAUGUUGCAAAGAAUUUCAUUGCAUUGUCAAUUAGGUCAUUGUAUUAAAGUAUUACUUAAUAAGCAAUUUCUAAUUUUAA ................(((((.(.....).)))))((((..(((((((....((((....)))).)))))))..))))............. ( -11.10) >DroSec_CAF1 18031 82 - 1 ----UUUUUUCAAUUUUGCAAAGAAUUUCAUUGCACUGUCAAUUAGGUCACUACAUUAAG-----ACUUAAUGAGCGAUUUCUAAUUUCAA ----............(((((.(.....).))))).(((..((((((((..........)-----)))))))..))).............. ( -12.70) >DroSim_CAF1 16493 86 - 1 CCCUUCUUAUGAAUUUUGCAAAGAAUUUCAUUGCACUGUCAAUUAGGUCACUACAUUAAG-----ACUUAAUGAGCGAUUUCUAAUUUCAA .........((((...(((((.(.....).))))).(((..((((((((..........)-----)))))))..))).........)))). ( -14.40) >consensus CCCUUCUUAUCAAUUUUGCAAAGAAUUUCAUUGCACUGUCAAUUAGGUCACUACAUUAAG_____ACUUAAUGAGCGAUUUCUAAUUUCAA ................(((((.(.....).))))).....(((((((((.((.(((((((......))))))))).)))..)))))).... (-11.46 = -11.47 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:26 2006