Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,453,715 – 4,453,835 |
Length | 120 |
Max. P | 0.565764 |
Location | 4,453,715 – 4,453,835 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.69 |
Mean single sequence MFE | -29.44 |
Consensus MFE | -20.08 |
Energy contribution | -20.64 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.03 |
Mean z-score | -1.92 |
Structure conservation index | 0.68 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565764 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4453715 120 - 22224390 UUUUUUUUUUUCAUUUGGUUUCGUUGGUGCCUGUGGGCGGCUGCUUGAUAAGCCACGUCCAUCGCAGGUGCUUUAAUUGAAUUUCUGUUCUGGGUAUUAAUGAGAAAAAUCAUUUUAAAC ....(((((((((((....(((...((..(((((((((((((........))))..))))...)))))..))......((((....)))).)))....)))))))))))........... ( -32.40) >DroSec_CAF1 55139 104 - 1 -UUUUUUUUUUCAUUUGG---------------UGGGCGGCUGCUUGAUAAGCCACGUCCAUCGCAGGUGCUUUAAUUGAAUUUCUGUUCUGGGUAUUAAUGAGAAAAAUCAUUUUAAAC -...(((((((((((.((---------------(((((((((........))))..)))))))...(((((((.....((((....)))).))))))))))))))))))........... ( -28.40) >DroSim_CAF1 56480 104 - 1 -UUUUUUUUUUCAUUUGG---------------UGGGCGGCUGCUUGAUAAGCCACGUCCAUCGCAGGUGCUUUAAUUGAAUUUCUGUUCUGGGUAUUAAUGAGAAAAAUCAUUUUAAAC -...(((((((((((.((---------------(((((((((........))))..)))))))...(((((((.....((((....)))).))))))))))))))))))........... ( -28.40) >DroEre_CAF1 57090 114 - 1 -UUUUGUUUUUGGU-----UACGUUGGUGCCUGUGGGCGGCUGCUUGAUAAGCCACGUCCAUCGCAGGUGCUUUAAUUGAAUUUCUGUUCUGGGUAUUAAUGAGAAAAAUCAUUUUAAAC -.......((..((-----((....((..(((((((((((((........))))..))))...)))))..)).))))..)).................(((((......)))))...... ( -28.10) >DroYak_CAF1 55796 114 - 1 -UUUUGUUUUUGGU-----UUCGUUGGUGCCUGUGGGCGGCUGCUUGAUAAGCCACGUCCAUCGCAGGUGCUUUAAUUGAAUUUCCGUUCUGGGUAUUAAUGAGAAAAAUCAUUUUAAAU -...((...((..(-----(((((((((((((((((((((((........))))..)))))).((....))....................))))))))))))))..)).))........ ( -29.90) >consensus _UUUUUUUUUUCAUUUGG_U_CGUUGGUGCCUGUGGGCGGCUGCUUGAUAAGCCACGUCCAUCGCAGGUGCUUUAAUUGAAUUUCUGUUCUGGGUAUUAAUGAGAAAAAUCAUUUUAAAC ....((((((((((...................(((((((((........))))..))))).....(((((((.....((((....)))).))))))).))))))))))........... (-20.08 = -20.64 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:00 2006