Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,442,356 – 4,442,476 |
Length | 120 |
Max. P | 0.814738 |
Location | 4,442,356 – 4,442,476 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -33.82 |
Consensus MFE | -32.50 |
Energy contribution | -32.54 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.34 |
Structure conservation index | 0.96 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.814738 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4442356 120 + 22224390 GCUUUGAUGGCUGCCCAGCUUAGCAUUGAUUUUGCCUCUCAGUUUUCGUUUCUCGGCUUCAUCUUGUUGUCUUUGAUUUGUCGAUUUGGGAUUGGUGGAAUCGGAAUCGAUCGGAGCAAU ((((((((((((....)))).....(((((((..((((((((...(((..((.((((........)))).....)).....))).))))))..))..))))))).....))))))))... ( -33.40) >DroSec_CAF1 44014 120 + 1 GCUUUGAUGGCUGCCCAGCUUAUCAUUGAUUUUGCCUCUCAGUUUUCGUUUCUCGGCUUCAUCUUGUUGUCUUUGAUUUGUCGAUUUGGGAUUGGUGGAAUAGGAAUCCAUCGGAGCAAU ((((((((((...(((((.......)))((((..((((((((...(((..((.((((........)))).....)).....))).))))))..))..)))).))...))))))))))... ( -32.60) >DroSim_CAF1 45207 120 + 1 GCUUUGAUGGCUGCCCAGCUUAGCAUUGAUUUUGCCUCUCAGUUUUCGUUUCUCGGCUUCAUCUUGUUGUCUUUGAUUUGUCGAUUUGGGAUUGGUGGAAUCGGAAUCGAUCGGAGCAAU ((((((((((((....)))).....(((((((..((((((((...(((..((.((((........)))).....)).....))).))))))..))..))))))).....))))))))... ( -33.40) >DroEre_CAF1 45904 120 + 1 GCUUUGAUGGCUGCCCAGCUUAGCAUUGAUUUUGCCUCUCAGUUUUCGUUUCUCGGCUUCAUCUGGUUGUCUUUGAUUUGUCGAUUUGGGAUUGGUGGAAUCGGAAUCGAUCGGAGCAAU ((((((((((((....)))).....(((((((..((((((((...(((..((.(((((......))))).....)).....))).))))))..))..))))))).....))))))))... ( -34.50) >DroYak_CAF1 44717 120 + 1 GCUUUGAUGGCUGCCCAGCUUAGCAUUGAUUUUGCCUCUCAGUUUUCGUUUCUCGGCUUCAUCUUGUUGUCUUUGAUUUGUCGACUUGGGAUUGGUGGAAUCGGAAUCGAUCGGAGCAAU ((((((((((((....)))).....(((((((..((((((((((..((..((.((((........)))).....))..))..))).)))))..))..))))))).....))))))))... ( -35.20) >consensus GCUUUGAUGGCUGCCCAGCUUAGCAUUGAUUUUGCCUCUCAGUUUUCGUUUCUCGGCUUCAUCUUGUUGUCUUUGAUUUGUCGAUUUGGGAUUGGUGGAAUCGGAAUCGAUCGGAGCAAU ((((((((((((....)))).....(((((((..((((((((((..((..((.((((........)))).....))..))..))).)))))..))..))))))).....))))))))... (-32.50 = -32.54 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:31 2006