Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,429,071 – 4,429,191 |
Length | 120 |
Max. P | 0.791995 |
Location | 4,429,071 – 4,429,191 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.33 |
Mean single sequence MFE | -36.86 |
Consensus MFE | -32.02 |
Energy contribution | -32.62 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.47 |
Structure conservation index | 0.87 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.791995 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4429071 120 + 22224390 CCAGUCGGACUUCCGAUUCUCGGAUUACGUCCCUGAAAUGUGAUCGAUUUCAAAGAGGGAGAACGGAUCGUAUCCUUCGGCGGCGAAAGUUUAACUGCCGCCUUCCACUUGAUUAAACCC .(((..((((.((((.....))))....))))))).....(((((((.......((((((..(((...))).))))))(((((((..........)))))))......)))))))..... ( -38.40) >DroSec_CAF1 31430 120 + 1 CCAGUCGGACUUCCGAUUCUCGGAUUACGUCCCUGAAAUGUGAUCGAUUUUAAAGAGGGAGAACGGAUCGGAUCCUUCGGCGGCGAAAGUUUAACUGCCGCCUUCCACUUGAUUAAACCC .(((..((((.((((.....))))....))))))).....(((((((.......((((((...((...))..))))))(((((((..........)))))))......)))))))..... ( -37.90) >DroSim_CAF1 32750 120 + 1 CCAGUCGGACUUCCGAUUCUCGGAUUACGUCCCUGAAAUGUGAUCGAUUUUAAAGAGGGAGAACGGAUCGGAUCCUUCGGCGGCGAAAGUUUAACUGCCGCCUUCCACUUGAUUAAACCC .(((..((((.((((.....))))....))))))).....(((((((.......((((((...((...))..))))))(((((((..........)))))))......)))))))..... ( -37.90) >DroEre_CAF1 32443 120 + 1 CCAGUCGGACUUCCGAUUCUCGGAUUACAUCCCUGAAAUGUGAUCGAUUUUAAAGAGGGAGAACGGAUCGGAUCCUUCGGCGGCGAAAGUUUAACUCCCGCCUUCCACUUGAUUAAACCC ..((((((....))))))....((((((((.......))))))))...(((((.(((((((((.((((...)))))))(((((.((.........))))))).))).)))..)))))... ( -33.90) >DroYak_CAF1 31795 120 + 1 CAAGUCGGACUUCCGAUUCUCGGAUUACGUCCCUGAAAUGUGAUAGAUUUUAUGAAGGGAGAACAGAUCGGAUCCUUCGGCGGCGAAAGUUUAACUGCCGCCUUCCACUUGAUUUAACCC (((((.(((..(((((((..((.....))(((((....(((((......))))).))))).....)))))))......(((((((..........))))))).))))))))......... ( -36.20) >consensus CCAGUCGGACUUCCGAUUCUCGGAUUACGUCCCUGAAAUGUGAUCGAUUUUAAAGAGGGAGAACGGAUCGGAUCCUUCGGCGGCGAAAGUUUAACUGCCGCCUUCCACUUGAUUAAACCC ..((((((((.((((.....))))....)))).......(((............((((((...(.....)..))))))(((((((..........)))))))...)))..))))...... (-32.02 = -32.62 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:31 2006