Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,419,751 – 4,419,856 |
Length | 105 |
Max. P | 0.689540 |
Location | 4,419,751 – 4,419,856 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 93.31 |
Mean single sequence MFE | -27.50 |
Consensus MFE | -24.19 |
Energy contribution | -24.53 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.09 |
Mean z-score | -1.99 |
Structure conservation index | 0.88 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.689540 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4419751 105 - 22224390 CCAUUCGGAUUCUCGUGUGUAUAUUCCCUGGACCCUCUGGAUGGGAUGGAUAUAUAAAUAUGGGUAUAUAUACAUGAAUAUAUAGCUCGUAUACCCGUUUGUUUG .((..(((....((((((((((((.(((....(((.......)))....((((....))))))).)))))))))))).(((((.....))))).)))..)).... ( -28.10) >DroSec_CAF1 22300 102 - 1 CCAUUUGGAUUCUCGUGUGUAUUUUCCCUGGACCCUCUGGAUGGGAUGGAUAUAU--AUACGAGUAU-UAUAUAUACAUAUAUAGCUCGUAUACCCGUUUGUUUG .((..(((......((((((((((((((....((....))..)))).))))))))--))((((((..-((((((....))))))))))))....)))..)).... ( -25.80) >DroSim_CAF1 23613 104 - 1 CCAUUCGGAUUCUCGUGUGUAUUUUCCCUGGACCCUCUGGAUGGGAUGGAUAUAUAGAUACGAGUAU-UAUAUAUACAUAUAUAGCUCGUAUACCCGUUUGUUUG .((..(((.......(((((((((((((....((....))..)))).))))))))).((((((((..-((((((....))))))))))))))..)))..)).... ( -28.60) >consensus CCAUUCGGAUUCUCGUGUGUAUUUUCCCUGGACCCUCUGGAUGGGAUGGAUAUAUA_AUACGAGUAU_UAUAUAUACAUAUAUAGCUCGUAUACCCGUUUGUUUG .((..(((.......(((((((((((((....((....))..)))).))))))))).((((((((...((((((....))))))))))))))..)))..)).... (-24.19 = -24.53 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:43 2006