Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,407,516 – 4,407,633 |
Length | 117 |
Max. P | 0.986908 |
Location | 4,407,516 – 4,407,633 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.05 |
Mean single sequence MFE | -33.08 |
Consensus MFE | -29.32 |
Energy contribution | -29.72 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.92 |
Structure conservation index | 0.89 |
SVM decision value | 2.06 |
SVM RNA-class probability | 0.986908 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4407516 117 + 22224390 CCCUCCGCUUUCGACUUCAAAGUGCCCAUAACAUAAAACAUAUAACAAUCGAC---CCACGAGGGUUGGAGGAGAAAGGUGCGCCCAUUUAGUAAUAAUUGGUUGCCUAAUUGGGCCAUU .((((((((((.(....))))))...........................(((---((....)))))))))).....((((.(((((.((((((((.....)))).)))).))))))))) ( -33.30) >DroSec_CAF1 10039 117 + 1 CCCUCCGCUUUCGACUUCAAAGUGCCCAUACCAUAAAACAUAAAACAAUCGAC---CCACGAGGGUUGGAGGAGAAAGGUGCGCCCAUUUAGUAAUAAUUGGUUGCCUAAUUGGGCCAUU .((((((((((.(....))))))...........................(((---((....)))))))))).....((((.(((((.((((((((.....)))).)))).))))))))) ( -33.30) >DroSim_CAF1 10130 117 + 1 CCCUCCGCUCUCGACUUCAAAGUGCCCAUACCAUAAAACAUAAAACAAUCGAC---CCACGAGGGUUGGAGGAGAAAGGUGCGCCCAUUUAGUAAUAAUUGGUUGCCUAAUUGGGCCAUU .(((((((((((((((....)))......................(....)..---...)))))).)))))).....((((.(((((.((((((((.....)))).)))).))))))))) ( -32.70) >DroEre_CAF1 10816 107 + 1 CCCUCCGCUUGCAACUUCAAAGUGCCCAU------------AAAACAAUCGACC-CACACGAGGGUUGGAGGAGAAAGGUGCGCCCAUUUAGUAAUAAUUGGUUGCCUAAUUGGGCCAUU .(((((....(((.((....)))))....------------.........((((-(......)))))))))).....((((.(((((.((((((((.....)))).)))).))))))))) ( -33.30) >DroYak_CAF1 10200 108 + 1 CCCUCCGCUUUUAACUUCAAAGUGCCCAU------------AAAACAAUCGACGACCCACGAGGGUUGGAGGAGAAAGGUGCGCCCAUUUAGUAAUAAUUGGUUGCCUAAUUGGGCCAUU .((((((((((.......)))))).....------------...........((((((....)))))))))).....((((.(((((.((((((((.....)))).)))).))))))))) ( -32.80) >consensus CCCUCCGCUUUCGACUUCAAAGUGCCCAUA_CAUAAAACAUAAAACAAUCGAC___CCACGAGGGUUGGAGGAGAAAGGUGCGCCCAUUUAGUAAUAAUUGGUUGCCUAAUUGGGCCAUU .((((((((((.......)))))....................(((..(((........)))..)))))))).....((((.(((((.((((((((.....)))).)))).))))))))) (-29.32 = -29.72 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:11 2006