Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 532,256 – 532,370 |
Length | 114 |
Max. P | 0.526553 |
Location | 532,256 – 532,370 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.68 |
Mean single sequence MFE | -34.52 |
Consensus MFE | -21.75 |
Energy contribution | -21.38 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.26 |
Mean z-score | -1.70 |
Structure conservation index | 0.63 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.526553 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 532256 114 - 22224390 CCAAGGAUUCUCAGGCACA-UGGCAUAUGCUUGCCACUUGAUUUGCGAACAUGUAUUUGAUGUCUAAUGCU-----GGAGAGUUCUGAGGCCUACCUCUGAAAAUGCUGUCCGCAUUUAU ...(((((((((.((((..-(((((......)))))...(((...((((......))))..)))...))))-----.)))))))))((((....))))...((((((.....)))))).. ( -34.70) >DroSim_CAF1 20391 115 - 1 CGAAGGAUUCUCAGGCACAAUGGCAUAUGCUUGCCACUUGAUUUGCGAACUUGUCUUUGAUGUCUGAUGCU-----GGAGAGUUUUGAGGCCUACCUCUGAAAACGCUUUCGGCAUUAAU ((((((.(((.((((..((((((((......))))).))).)))).)))....)))))).....(((((((-----((((.(((((((((....))))..)))))..))))))))))).. ( -34.90) >DroEre_CAF1 23624 120 - 1 ACAAGGAUUCUCGGGCACAAUGGCAUAUGUUUGCCACUUCAUUUGCGAACUUGCCUUUGAUGUCUAAUGUCGUAGUGGGUAGUUUUGAGGCCUUCCUUUGAAAAUGCUUUCGGCAUUAAU ............((((((((.((((...((((((..........)))))).)))).))).)))))(((((((....(((((.(((..(((.....)))..))).))))).)))))))... ( -34.50) >DroYak_CAF1 17936 115 - 1 UCGAGGAUUCUCAGGCACAAUGGCAUCUGCUUGCCACUUCAUUUGCGAACUCGCCUUUGAUGUCUAAUGCC-----GGGUACUUUGGAGGCCUGCCUGUGAAAAUGCUUUACGCAUUAAU .......(((.((((((...(((((......)))))................(((((..(.((((......-----.)).)).)..))))).)))))).)))(((((.....)))))... ( -34.00) >consensus CCAAGGAUUCUCAGGCACAAUGGCAUAUGCUUGCCACUUCAUUUGCGAACUUGCCUUUGAUGUCUAAUGCC_____GGAGAGUUUUGAGGCCUACCUCUGAAAAUGCUUUCCGCAUUAAU ............(((((((((((((......)))))........(((....)))..))).)))))((((((.....((....(((.((((....)))).)))....))...))))))... (-21.75 = -21.38 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:52 2006