Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,402,173 – 4,402,289 |
Length | 116 |
Max. P | 0.662652 |
Location | 4,402,173 – 4,402,289 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 90.83 |
Mean single sequence MFE | -18.45 |
Consensus MFE | -14.40 |
Energy contribution | -14.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.18 |
Mean z-score | -1.59 |
Structure conservation index | 0.78 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.662652 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4402173 116 + 22224390 UCUCGAAAACGAAUUCAAUAAAUUAAUUUCGUUUUUGGCUCAGC---AGCAUCAAAGAAACUUUAAUCCCGCUAAGAAAUCUGCUUUCCCAUCGUUGUUUCUUCGCUUAUUCCAUCAAA (((((((((((((..............))))))))))(((....---))).....)))............((.(((((((..((.........)).))))))).))............. ( -17.84) >DroSec_CAF1 4788 119 + 1 UCCCGAAAACGAAUUCAAUAAAUUAAUUUCGUUUUUGGCUCAGCAGCAGCAUCAAAGAAACUUUAAUCCCGCUAAGAAAUCUGCUUUCCCAUCGCUGUUUCUUCGUUUAUUCCAUCAAA ..(((((((((((..............)))))))))))...((.((((((...((((...))))......((..(....)..)).........)))))).))................. ( -20.94) >DroSim_CAF1 4863 119 + 1 UACCGAAAACGAAUUCAAUAAAUUAAUUUCGUUUUUGGCUCAGCAGCAGCAUCAAAGAAACUUUAAUCCCGCUAAGAAAUCUGCUUUCCCAUCGCUGUUUCUUCGUUUAUUCCAUCAAA ..(((((((((((..............)))))))))))...((.((((((...((((...))))......((..(....)..)).........)))))).))................. ( -21.14) >DroEre_CAF1 5137 113 + 1 UCCCAAAAACGAAUUCAAUAAAUUAAUUUCGUUUUUGGCUC------AGCAUCAUAGAAACUUUAAUCCCGCAAAGAAAUCUGCUUUCCCAUCGUUGUUUCUUUUUUCAUUUCAUCAAA ..(((((((((((..............)))))))))))...------........((((((.........(((.(....).)))............))))))................. ( -17.34) >DroYak_CAF1 4971 113 + 1 ACCCAAUAACGAAUUCAAUAAAUUAAUUUGGUUUUUGGCGC------AGCAUCGAAGAAACUUUAAUCCCGCUAAGAAAUCUGCUUUCCCAUCGUUGUUUCUUCUUUCAUUCCAUCAAA ....((((((((..((((.........))))(((((((((.------.(.((..(((...)))..))).))))))))).............)))))))).................... ( -15.00) >consensus UCCCGAAAACGAAUUCAAUAAAUUAAUUUCGUUUUUGGCUCAGC___AGCAUCAAAGAAACUUUAAUCCCGCUAAGAAAUCUGCUUUCCCAUCGUUGUUUCUUCGUUUAUUCCAUCAAA ..(((((((((((..............)))))))))))................................((.(((((((..((.........)).))))))).))............. (-14.40 = -14.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:01 2006