Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,400,601 – 4,400,701 |
Length | 100 |
Max. P | 0.593828 |
Location | 4,400,601 – 4,400,701 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.63 |
Mean single sequence MFE | -23.08 |
Consensus MFE | -17.60 |
Energy contribution | -18.20 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.57 |
Structure conservation index | 0.76 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.593828 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4400601 100 + 22224390 GUGAAUAAAUUUAAAUGAAAGUUCUUUUAUUUAUUGCUAUUACAGCGGCAAGAUGCUGC--------------------UUAUGCACUUAGAAAGUGCGCCAUGCAAAUGAGAAGAAAUU .....................(((((((.....((((......((((((.....)))))--------------------)...(((((.....))))).....))))...)))))))... ( -22.80) >DroSec_CAF1 3323 100 + 1 GUGAAUAAAUUUAAAUGAAAGUUCUUUUAUUUAUUGCUAUUACAGCGGCAAGAUGCUGC--------------------UUAUGCACUUAGAAAGUGCGCCAUGCAAAUGAGAAGAAAUU .....................(((((((.....((((......((((((.....)))))--------------------)...(((((.....))))).....))))...)))))))... ( -22.80) >DroSim_CAF1 3354 100 + 1 GUGAAUAAAUUUAAAUGAAAGUUCUUUUAUUUAUUGAUAUUACAGCGGCAAGAUGCUGC--------------------UUAUGCACUUAGAAAGUGCGCCAUGCAAAUGAGAAGAAAUU ((((.......(((((((((....)))))))))......))))((((((.....)))))--------------------)...(((((.....)))))..(((....))).......... ( -21.22) >DroEre_CAF1 3535 120 + 1 GUGAAUAAAUGUAAAUGAAAGUUCUUUUAUUUAUUGCUAUUACACCGGCGAGAUGCUGCUUCAUUUUGUCUACACUCUCCCAUGCACUUAGAAAGUGCGCCAUGCAAAUGAGAAGAAAUU (((((((...((((((((((....))))))))))...)))).))).(((((((((......))))))))).....((((....(((((.....)))))((...))....))))....... ( -27.40) >DroYak_CAF1 3370 100 + 1 GUGAAUAAAUGUAAAUGAAAGUUCUUUUAUUUAUUGCUAUUACACCGGCAAGAUGCUGC--------------------CCAUGCACUUAGAAAGUGCGCCAUGCAAAUGAGAAGAAAUU (((((((...((((((((((....))))))))))...)))).))).((((......)))--------------------)...(((((.....)))))..(((....))).......... ( -21.20) >consensus GUGAAUAAAUUUAAAUGAAAGUUCUUUUAUUUAUUGCUAUUACAGCGGCAAGAUGCUGC____________________UUAUGCACUUAGAAAGUGCGCCAUGCAAAUGAGAAGAAAUU .....................(((((((.....((((.......(((((.....)))))........................(((((.....))))).....))))...)))))))... (-17.60 = -18.20 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:00 2006