Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,380,559 – 4,380,653 |
Length | 94 |
Max. P | 0.728788 |
Location | 4,380,559 – 4,380,653 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 72.70 |
Mean single sequence MFE | -18.90 |
Consensus MFE | -6.40 |
Energy contribution | -8.16 |
Covariance contribution | 1.76 |
Combinations/Pair | 1.19 |
Mean z-score | -1.81 |
Structure conservation index | 0.34 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.728788 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4380559 94 + 22224390 AAAUUGA--UAC-AUAAAUGCA--GAAAUCAACUCGAAUUUUAAGGAAUUGAACUAAUUAGAAUUCGAUUCG----------AUUCUUUUGCAUUUGAAAGUUUGUCCU .......--...-.((((((((--((((((...(((((((((((.............)))))))))))...)----------))..)))))))))))............ ( -20.42) >DroSec_CAF1 165768 95 + 1 AUAUUGA--UACCACAAAUGCA--GAAGUCAACUCAAAUUUCAAGGAAUUGAUCCUAUUAGAAUUCGAUUCG----------AUUCUUUUGCAUUUCAAAGUUUGCCCU .......--......(((((((--((((((...((.(((((..((((.....))))....))))).))...)----------)..)))))))))))............. ( -15.30) >DroSim_CAF1 153236 95 + 1 AUAUUGA--UACCACAAAUGCA--GAAGUCAACUCGAAUUUUAAGGAAUUGAACCAAUUAGAAUUCGAUUCG----------AUUCUUUUGCAUUUCAAAGUUUGCCCU .......--......(((((((--((((((...(((((((((((((.......))..)))))))))))...)----------)..)))))))))))............. ( -21.10) >DroEre_CAF1 176581 106 + 1 AAAUAUA--UAC-AUAUGUGCAGAGAAGUCUACUUGGAUUUUAAGGAAUUCAACUUCUUAAAAUUCGACUAUGUGUGAAAAAGUUCUUUUGCAUUUCAAAAUUUGCCAU .......--...-..(((.(((((..((((.....((((((((((((.......))))))))))))))))..(((..(((......)))..))).......)))))))) ( -21.40) >DroYak_CAF1 169047 93 + 1 AAAUAUAUAUAC-AUAUGUGCA--GAAGUCUAUUCG-------------UCAACUUUUUAAAAUUCGAUUAGUUGUGAAAAAGUUCUUUUGCAUUUCAAAAGUUACCAU ............-....(((((--((((.((.((((-------------.(((((..((.......))..)))))))))..))..)))))))))............... ( -16.30) >consensus AAAUUGA__UAC_AUAAAUGCA__GAAGUCAACUCGAAUUUUAAGGAAUUGAACUUAUUAGAAUUCGAUUCG__________AUUCUUUUGCAUUUCAAAGUUUGCCCU ...............(((((((..(((......(((((((((((.............)))))))))))...............)))...)))))))............. ( -6.40 = -8.16 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:51 2006