Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,376,078 – 4,376,171 |
Length | 93 |
Max. P | 0.940653 |
Location | 4,376,078 – 4,376,171 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 90.26 |
Mean single sequence MFE | -14.38 |
Consensus MFE | -11.88 |
Energy contribution | -12.38 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.28 |
Structure conservation index | 0.83 |
SVM decision value | 1.31 |
SVM RNA-class probability | 0.940653 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4376078 93 - 22224390 UCGCCCAACGUCUAUUUUGAACAA--------CAAAUAAACGAAA-AAAGAGCACUUAGUCAUCACAUCACAAUAAGUGCAACAGCAACAAAUUGGCUU-UUA ..(((...(((.(((((.......--------.))))).)))...-.....(((((((...............)))))))..............)))..-... ( -15.66) >DroSec_CAF1 161387 92 - 1 UCGCCCAACGUCUAUUUUGAACAA--------CAAAUAAACGAAA-AAAGAGCACUUAGUCAUCACAUCA-AAUAAGUGCAACAGCAACAACUUGGCUU-UUA ..(((...(((.(((((.......--------.))))).)))...-.....(((((((............-..)))))))..............)))..-... ( -15.74) >DroSim_CAF1 148858 92 - 1 UCGCCCAACGUCUAUUUUGAACAA--------CAAAUAAACGAAA-AAAGAGCACUUAGUCAUCACAUCA-AAUAAGUGCAACAGCAACAACUUGGCUU-UUA ..(((...(((.(((((.......--------.))))).)))...-.....(((((((............-..)))))))..............)))..-... ( -15.74) >DroYak_CAF1 164564 102 - 1 UCGCCCAACGUCUAUUUAAAACAAAAAAACAAGAUAUAAACGAAAAAAAGAGCACUUAGUCAUCACAUCA-AAUAAGUGCAACAGCAACAACUUGACAACUUA ..((....(((.(((....................))).))).........(((((((............-..)))))))....))................. ( -10.39) >consensus UCGCCCAACGUCUAUUUUGAACAA________CAAAUAAACGAAA_AAAGAGCACUUAGUCAUCACAUCA_AAUAAGUGCAACAGCAACAACUUGGCUU_UUA ..(((...(((.(((((................))))).))).........(((((((...............)))))))..............)))...... (-11.88 = -12.38 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:46 2006