Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,271,270 – 4,271,382 |
Length | 112 |
Max. P | 0.995908 |
Location | 4,271,270 – 4,271,382 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 95.92 |
Mean single sequence MFE | -22.70 |
Consensus MFE | -20.93 |
Energy contribution | -20.89 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.92 |
Structure conservation index | 0.92 |
SVM decision value | 2.63 |
SVM RNA-class probability | 0.995908 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4271270 112 + 22224390 CCUCGACAAACAUUUGACCAUUGAAGCGCAUUUUUCGCUUGCGCGUCAUUUGUCAACUUGGCCGCUUCUUU--UUUUCAUUAUUUGCUUCUUUGCGAUUCUGCCACCCCUUGUU ....(((((....(((((...(((.(((((.........))))).)))...)))))..((((.........--..........((((......))))....))))....))))) ( -22.60) >DroSec_CAF1 57896 112 + 1 CCUCGACAAACAUUUGACCAUUGAAGCGCAUUUUUCGCUUGCGCGUCAUUUGUCAACUUGGCCGCUUCUUU--UUUUCAUUAUUUGCUUCUUUGCGAUUCUGCCACCCCUUGUU ....(((((....(((((...(((.(((((.........))))).)))...)))))..((((.........--..........((((......))))....))))....))))) ( -22.60) >DroSim_CAF1 52846 112 + 1 CCUCGACAAACAUUUGACCAUUGAAGCGCAUUUUUCGCUUGCGCGUCAUUUGUCAACUUGGCCGCUUCUUU--UUUUCAUUAUUUGCUUCUUUGCGAUUCUGCCACCCCUUGUU ....(((((....(((((...(((.(((((.........))))).)))...)))))..((((.........--..........((((......))))....))))....))))) ( -22.60) >DroEre_CAF1 64961 111 + 1 CCUGGACAAACAUUUGACCAUUGAAGCGCAUUUUUCGCUUGCGCGUCAUUUGUCAACUUGGCCGCUUCUUU---UUUCAUUAUUUGCUUCCUUGCGAUUCUGCCGCCCCUUGUU ....(((((....(((((...(((.(((((.........))))).)))...)))))...(((.((......---.........((((......))))....)).)))..))))) ( -25.11) >DroYak_CAF1 59414 114 + 1 CCUCGACAAACAUUUGACCAUUGAAGCGCAUUUUUCGCUUGCGCGUCAUUUGUCAACUUGGCCGCUUCUUUUUUUUUCAUUAUUUACUCCUUUGCGAUUUCGACGCCCCUUGUU ..((((....((.(((((...(((.(((((.........))))).)))...)))))..))..(((............................)))...))))........... ( -20.59) >consensus CCUCGACAAACAUUUGACCAUUGAAGCGCAUUUUUCGCUUGCGCGUCAUUUGUCAACUUGGCCGCUUCUUU__UUUUCAUUAUUUGCUUCUUUGCGAUUCUGCCACCCCUUGUU ....(((((....(((((...(((.(((((.........))))).)))...)))))..(((((((............................))).....))))....))))) (-20.93 = -20.89 + -0.04)
Location | 4,271,270 – 4,271,382 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 95.92 |
Mean single sequence MFE | -25.33 |
Consensus MFE | -22.88 |
Energy contribution | -22.88 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.08 |
Mean z-score | -1.77 |
Structure conservation index | 0.90 |
SVM decision value | 1.97 |
SVM RNA-class probability | 0.984423 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4271270 112 - 22224390 AACAAGGGGUGGCAGAAUCGCAAAGAAGCAAAUAAUGAAAA--AAAGAAGCGGCCAAGUUGACAAAUGACGCGCAAGCGAAAAAUGCGCUUCAAUGGUCAAAUGUUUGUCGAGG .(((((.(((.((......((......))......(....)--......)).)))...(((((...(((.(((((.........))))).)))...)))))...)))))..... ( -25.30) >DroSec_CAF1 57896 112 - 1 AACAAGGGGUGGCAGAAUCGCAAAGAAGCAAAUAAUGAAAA--AAAGAAGCGGCCAAGUUGACAAAUGACGCGCAAGCGAAAAAUGCGCUUCAAUGGUCAAAUGUUUGUCGAGG .(((((.(((.((......((......))......(....)--......)).)))...(((((...(((.(((((.........))))).)))...)))))...)))))..... ( -25.30) >DroSim_CAF1 52846 112 - 1 AACAAGGGGUGGCAGAAUCGCAAAGAAGCAAAUAAUGAAAA--AAAGAAGCGGCCAAGUUGACAAAUGACGCGCAAGCGAAAAAUGCGCUUCAAUGGUCAAAUGUUUGUCGAGG .(((((.(((.((......((......))......(....)--......)).)))...(((((...(((.(((((.........))))).)))...)))))...)))))..... ( -25.30) >DroEre_CAF1 64961 111 - 1 AACAAGGGGCGGCAGAAUCGCAAGGAAGCAAAUAAUGAAA---AAAGAAGCGGCCAAGUUGACAAAUGACGCGCAAGCGAAAAAUGCGCUUCAAUGGUCAAAUGUUUGUCCAGG ......(((((((....((....))..((...........---......)).)))...(((((...(((.(((((.........))))).)))...)))))......))))... ( -28.43) >DroYak_CAF1 59414 114 - 1 AACAAGGGGCGUCGAAAUCGCAAAGGAGUAAAUAAUGAAAAAAAAAGAAGCGGCCAAGUUGACAAAUGACGCGCAAGCGAAAAAUGCGCUUCAAUGGUCAAAUGUUUGUCGAGG ........(((.......))).............................((((....(((((...(((.(((((.........))))).)))...)))))......))))... ( -22.30) >consensus AACAAGGGGUGGCAGAAUCGCAAAGAAGCAAAUAAUGAAAA__AAAGAAGCGGCCAAGUUGACAAAUGACGCGCAAGCGAAAAAUGCGCUUCAAUGGUCAAAUGUUUGUCGAGG .(((((.(((.((......((......))......(....)........)).)))...(((((...(((.(((((.........))))).)))...)))))...)))))..... (-22.88 = -22.88 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:54 2006