Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,230,044 – 4,230,135 |
Length | 91 |
Max. P | 0.695398 |
Location | 4,230,044 – 4,230,135 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 74.27 |
Mean single sequence MFE | -20.67 |
Consensus MFE | -9.33 |
Energy contribution | -11.89 |
Covariance contribution | 2.56 |
Combinations/Pair | 1.05 |
Mean z-score | -1.83 |
Structure conservation index | 0.45 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.695398 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4230044 91 + 22224390 -ACCCAUUGCCAGUGUGGAUCCAUUUUUUUUUUGUCAGUUUAUUUAUUGUUGCUCCAUUUUU-------AGUAGCUGACAAGACAAAUAUGCCCAAGGC -.......(((....(((...(((.(((.(((((((((((.......((......)).....-------...))))))))))).))).))).))).))) ( -19.36) >DroSec_CAF1 17284 89 + 1 -ACC-UUUGCCAUUGUGGAUCUAUUUU-UUUUUGUCAGUUCAUUUAUUGCUGCUCCAUUUUU-------AGUAGCUGACAAGACAAAUAGGCCCAAGGC -...-...(((.(((.((.(((((((.-.((((((((...........((((((........-------)))))))))))))).))))))))))))))) ( -25.20) >DroSim_CAF1 23010 88 + 1 -ACC-UUUGCCAUUGUGGAUCUAUUUU--UUUUGUCAGUUCAUUUAUUGCUGCUCCAUUUUU-------AGUAGCUGACAAGACAAAUAGGCCCAAGGC -...-...(((.(((.((.(((((((.--((((((((...........((((((........-------)))))))))))))).))))))))))))))) ( -27.20) >DroYak_CAF1 16713 79 + 1 G----------A-UAAAAAUCCAUUUU--UUCUGUCAGUUUAUUUAUUGCUGCUCCAUUUUU-------AGUAGCUGACAAGACAAACAGGCCCAAGGC .----------.-..............--..((((..((((.......((((((........-------)))))).....))))..))))(((...))) ( -13.10) >DroAna_CAF1 19505 92 + 1 ---A-UCUGUAUCUGUGUAUCUGUUU---CUGUAUCUGUAUCUCGGUAACUGCUCUACUUUUUUGUGUCGCUAGCUGACAGGACAAACAGGCCCAAGGG ---.-.......((.((..((((((.---.(((.((((....(((((....((..(((......)))..))..))))))))))))))))))..)).)). ( -18.50) >consensus _ACC_UUUGCCAUUGUGGAUCUAUUUU__UUUUGUCAGUUUAUUUAUUGCUGCUCCAUUUUU_______AGUAGCUGACAAGACAAAUAGGCCCAAGGC ...............(((.(((((((...(((((((((((................................))))))))))).))))))).))).... ( -9.33 = -11.89 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:40 2006