Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,229,863 – 4,229,982 |
Length | 119 |
Max. P | 0.999819 |
Location | 4,229,863 – 4,229,982 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.06 |
Mean single sequence MFE | -33.37 |
Consensus MFE | -22.93 |
Energy contribution | -25.83 |
Covariance contribution | 2.90 |
Combinations/Pair | 1.20 |
Mean z-score | -3.73 |
Structure conservation index | 0.69 |
SVM decision value | 4.07 |
SVM RNA-class probability | 0.999781 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4229863 119 + 22224390 GUUGCCUAGUAACAAGUAACCAAAAAUCGAAAAAAUUAGCCACAAAAAUCAGCAUUUU-UAGGGCAAAUUGUUUGAUUUUUCGGCUUAAAUUACCAGGCAAACAGGAAUCCCAGAAGGUG .((((((.((((....(((((((((((((((..((((.(((..((((((....)))))-)..))).)))).)))))))))).)).)))..)))).))))))...((....))........ ( -29.80) >DroSim_CAF1 22825 120 + 1 AUCACUUGGUACCAAAAAUCCAAAAAUCUAUCUAAUUCGGCACAAAAAUGCGCAUUUUGUAAUGCAAAUUGUUUGAUUUUUCGGUUUAAAUUACCAGGCGAACAGGAAUCCCAGAAGGUG .((.(((((((....(((((.(((((((...........(((......)))(((((....))))).........))))))).)))))....))))))).))...((....))........ ( -26.30) >DroEre_CAF1 20422 119 + 1 AUCGCCUGGUGGCAAAAAUCGAAAAAGUCCUAAAAUAUGCCAUAAAAAUGCGCAUUUUG-UAGGCAAUUUUUAAAAUUUUUCGGUUUAAGUUACCAGGCGAACAGGAAUUCCAGAAGGUG .((((((((((((..(((((((((((.....(((((.((((((((((.......)))))-).))))))))).....)))))))))))..))))))))))))...((....))........ ( -44.00) >consensus AUCGCCUGGUAACAAAAAUCCAAAAAUCCAUAAAAUUAGCCACAAAAAUGCGCAUUUUGUAAGGCAAAUUGUUUGAUUUUUCGGUUUAAAUUACCAGGCGAACAGGAAUCCCAGAAGGUG .(((((((((((...(((((.(((((((.((((((((.(((...(((((....)))))....))).))))))))))))))).)))))...)))))))))))...((....))........ (-22.93 = -25.83 + 2.90)
Location | 4,229,863 – 4,229,982 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.06 |
Mean single sequence MFE | -34.00 |
Consensus MFE | -23.98 |
Energy contribution | -24.77 |
Covariance contribution | 0.79 |
Combinations/Pair | 1.20 |
Mean z-score | -3.86 |
Structure conservation index | 0.71 |
SVM decision value | 4.16 |
SVM RNA-class probability | 0.999819 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4229863 119 - 22224390 CACCUUCUGGGAUUCCUGUUUGCCUGGUAAUUUAAGCCGAAAAAUCAAACAAUUUGCCCUA-AAAAUGCUGAUUUUUGUGGCUAAUUUUUUCGAUUUUUGGUUACUUGUUACUAGGCAAC ..((....)).........((((((((((((...((((.((((((((((.((((.(((.((-(((((....))))))).))).)))).))).)))))))))))....)))))))))))). ( -37.40) >DroSim_CAF1 22825 120 - 1 CACCUUCUGGGAUUCCUGUUCGCCUGGUAAUUUAAACCGAAAAAUCAAACAAUUUGCAUUACAAAAUGCGCAUUUUUGUGCCGAAUUAGAUAGAUUUUUGGAUUUUUGGUACCAAGUGAU ..((....)).........((((.((((.......((((((((.(((((.((((((((((....)))))((((....))))..........)))))))))).)))))))))))).)))). ( -27.71) >DroEre_CAF1 20422 119 - 1 CACCUUCUGGAAUUCCUGUUCGCCUGGUAACUUAAACCGAAAAAUUUUAAAAAUUGCCUA-CAAAAUGCGCAUUUUUAUGGCAUAUUUUAGGACUUUUUCGAUUUUUGCCACCAGGCGAU ..((....)).........(((((((((..(..(((.(((((((((((((((..((((..-.(((((....)))))...))))..)))))))).))))))).)))..)..))))))))). ( -36.90) >consensus CACCUUCUGGGAUUCCUGUUCGCCUGGUAAUUUAAACCGAAAAAUCAAACAAUUUGCCUUACAAAAUGCGCAUUUUUGUGGCAAAUUUUAUAGAUUUUUGGAUUUUUGCUACCAGGCGAU ..((....)).........((((((((((...((((.(.((((((((((.((((((((....(((((....)))))...)))))))).))).))))))).)...)))).)))))))))). (-23.98 = -24.77 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:39 2006