Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 30,127 – 30,240 |
Length | 113 |
Max. P | 0.593219 |
Location | 30,127 – 30,240 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.52 |
Mean single sequence MFE | -28.24 |
Consensus MFE | -19.70 |
Energy contribution | -21.82 |
Covariance contribution | 2.12 |
Combinations/Pair | 1.12 |
Mean z-score | -2.04 |
Structure conservation index | 0.70 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.593219 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 30127 113 + 22224390 ACUGUAGUCCACUUUUCGAAAGAAUAUCAUCCCGGGAAUCAAUGUUAUCUUUUCUAGAUAAACUGAUGAUGCGUUUACUUUUACUACUUCGCAUUACGCUUAUCGACGAC-------GAC ......(((.....(((....)))........(((..((((...((((((.....))))))..))))((((((................)))))).......)))..)))-------... ( -19.19) >DroSec_CAF1 17409 117 + 1 UCUUUAGGCCACUUUUCGAAAGAAUAUCAUCCCG-AACUCGAUAUUAUCUUCUCUGGAUAAAGUGAUAAUGCGUUUACUUUUAUUA--UCGCAUUACGCUUAUCGACGGGGACUGGAGAC (((((((.......(((....))).....(((((-...((((((((((((.....))))))((((.(((((((.............--.)))))))))))))))))))))).))))))). ( -36.24) >DroSim_CAF1 17160 119 + 1 UCUUUAGGCCACUUUUCGAAAGAAUAUCAUCCCG-AACUCGAUAUUAUUUUCUCUGGAUAAACUGAUAAUGCGUUUACUUUUACUACUUCGCAUUACGCCUAUCGACGGGGACUGGAGAC (((((((.......(((....))).....(((((-...((((((((((((.....)))))).....(((((((................)))))))....))))))))))).))))))). ( -29.29) >consensus UCUUUAGGCCACUUUUCGAAAGAAUAUCAUCCCG_AACUCGAUAUUAUCUUCUCUGGAUAAACUGAUAAUGCGUUUACUUUUACUACUUCGCAUUACGCUUAUCGACGGGGACUGGAGAC .((((((.......(((....))).....(((((....((((((((((((.....)))))).....(((((((................)))))))....))))))))))).)))))).. (-19.70 = -21.82 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:14 2006