Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,168,060 – 4,168,179 |
Length | 119 |
Max. P | 0.862992 |
Location | 4,168,060 – 4,168,179 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 86.83 |
Mean single sequence MFE | -28.70 |
Consensus MFE | -22.17 |
Energy contribution | -22.80 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.07 |
Mean z-score | -2.00 |
Structure conservation index | 0.77 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.862992 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4168060 119 - 22224390 UCUUGUUUACCACGCGCGAGUAUGGGAAAUUCUCGGGAAACCAACUCGUAAAAAAAAUAUUUAAAAGGGAAAACAAGAGCAGGGCAAGGCGAAAAGGAGUUACAGAAAGCGCGUGUGGC .........((((((((((((..(((.....)))((....)).))))((((...............(......)....((........)).........)))).......)))))))). ( -29.40) >DroSec_CAF1 899 119 - 1 UCUUGUUUACCACGCGCGAGUAUGGGAAAUUCUCGGGAAUCCAACUCGUAAAAAAUAUAUUUAAAAGGGAAAACAAGAGCAGCGCAAUGCGAAAAGGAGUUACAAAAAGCAAGUGUGGC ((((((((.((....((((((.(((...((((....)))))))))))))......((....))....)).))))))))((.((((..(((.....(......).....))).)))).)) ( -26.80) >DroSim_CAF1 888 119 - 1 UCUUGUUUACCACGCGCGAGUAUGGGAAAUUCUCGGGAAACCAACUCGUAAAAAAAAUAUUUAAAAGGGAAAACAAGAGCAGCGCAAGGCGAAAAGGAGUUACAAAGAGCAAGUGUGGC ((((((((.((....((((((..(((.....)))((....)).)))))).(((......))).....)).))))))))((.((((...((.....(......).....))..)))).)) ( -29.90) >DroYak_CAF1 898 105 - 1 UCUUGUUUACCACGCGCUAGUGCGAGAAAUUCUUGGGAAACCAACUCAAAAA-----------AAAAGGAAAACAAGAG---CGCAAGGCGAAAAGGAGUGACAAAAAGCGCGUGUGGC .........((((((((..(((((((......((((....))))))).....-----------....(.....)....)---)))...((.....(......).....)))))))))). ( -28.70) >consensus UCUUGUUUACCACGCGCGAGUAUGGGAAAUUCUCGGGAAACCAACUCGUAAAAAAAAUAUUUAAAAGGGAAAACAAGAGCAGCGCAAGGCGAAAAGGAGUUACAAAAAGCAAGUGUGGC ((((((((.((....((((((..(((.....)))((....)).))))))..................)).))))))))....((((..((.....(......).....))...)))).. (-22.17 = -22.80 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:03 2006