Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,120,164 – 4,120,284 |
Length | 120 |
Max. P | 0.756940 |
Location | 4,120,164 – 4,120,284 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.61 |
Mean single sequence MFE | -41.70 |
Consensus MFE | -34.25 |
Energy contribution | -34.37 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.80 |
Structure conservation index | 0.82 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.756940 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4120164 120 - 22224390 UCAAAUUACCUCGAGUGCACUUGGCGCUUUUUCACAGUCAGAGUUGGAGUCCCAGGAUUUGGCUCGGGAUCUGGCUGGGCAUCGGGUUCUGGGCCCAGCAAUUAAGCUUGUGUCGAGUGU ................(((((((((((.......(((((.((((..((.((....))))..))))..)).)))(((((((.((((...)))))))))))..........))))))))))) ( -47.30) >DroSim_CAF1 7071 120 - 1 UCAAAUUACCACGAGUGCACUUGGCGCUUUUUCACAGUCAGUGUUGGAGUCCCAGGAUUUGGCUCGGGAUCUGGGUGGGCAUCGGGUUCUGGGCCCAGCAAUUAAGCUUGUGUCGAGUGU .....((..(((((((...(((((.(((((..(((.....)))..))))).)))))....((((((((((((((.......))))))))))))))..........)))))))..)).... ( -43.70) >DroYak_CAF1 8295 95 - 1 UCAAAUUACCUCGAGUGCACUUGGCGCU-------------------------AGGAUUUGGCUCGGGAUCUGGCUGGGCAUCGGGUUUUGGUCCCAGCAAUUAAGCUUGUGUCGAGUGU ................(((((((((((.-------------------------(((.....(((.((((((.((((.(....).))))..))))))))).......)))))))))))))) ( -34.10) >consensus UCAAAUUACCUCGAGUGCACUUGGCGCUUUUUCACAGUCAG_GUUGGAGUCCCAGGAUUUGGCUCGGGAUCUGGCUGGGCAUCGGGUUCUGGGCCCAGCAAUUAAGCUUGUGUCGAGUGU ................(((((((((((.................................((((((((((((((.......)))))))))))))).(((......))).))))))))))) (-34.25 = -34.37 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:55 2006