Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,054,267 – 4,054,383 |
Length | 116 |
Max. P | 0.897603 |
Location | 4,054,267 – 4,054,383 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 86.30 |
Mean single sequence MFE | -35.32 |
Consensus MFE | -26.60 |
Energy contribution | -26.56 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.26 |
Mean z-score | -2.16 |
Structure conservation index | 0.75 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.897603 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4054267 116 - 22224390 GGAUUUUUGCGGUUGCCAUUCGGACGGAAGUUGGAAAGUUUAGAACGUUGCGGGGAAUU-UUCGUAUUGCGAGGGGUUUGGGGUUCAGGGUUGAGCCCAUUAAAGGUCAACUGUGAA .....((..((((((((.(((.(((....))).)))..(((((..(((((((..(...)-..))))..))).........((((((......)))))).))))))).))))))..)) ( -37.70) >DroSec_CAF1 67597 109 - 1 GGAUUUUUGCGGUUGCCAUUCGGACGGAAGUUGGAAAGUUUAGAACGUUGCGGGGGAUU-UUCGUACUGCGUGGGGUUC-------GGGGUUCAGCCCAUUAAAGGUCAACUGUGAA .....((..((((((((.(((.(((....))).)))......((((.(..((.((....-......)).))..).))))-------.(((.....)))......)).))))))..)) ( -39.60) >DroSim_CAF1 64796 116 - 1 GGAUUUUUGCGGUUGCCAUUCGGACGGAAGUUGGAAAGUUUAGAACGUUGCAGGGUAUU-UUCGUACUGCGUGGGGUUCGGGGUUCGGGGUUCAGCCCAUUAAAGGUCAACUGUGAA .....((..((((((((.(((.(((....))).)))......((((.(..(..(((((.-...)))))..)..).)))).(((((........)))))......)).))))))..)) ( -39.00) >DroEre_CAF1 67365 103 - 1 GGAUUUUUGCGGUUGCUAUUCGGACGGAAGUUGGAAAGUUUAGAACGUUGUGGGGGAUUUUUCGUACUGCAAGGG--------------GUUCAGCCCAUUAAAGGUCAACUGUGAA .....((..((((((((.(((.(((....))).)))..(((((....(((..(..((....))...)..))).((--------------(.....))).))))))).))))))..)) ( -28.50) >DroYak_CAF1 65565 103 - 1 GGAUUUUUGCGGUUGCCAUUCGGACGGAAGUUGGAAAGUUUGAAAUGUUUUGGGGAAUUUUUCGCACUGCAAGGG--------------GUUCAGCCCAUUAAAGGUCAACUGUGAA .....((..((((((((.(((.(((....))).)))..(((((..(((..((.(((....))).))..)))..((--------------(.....))).))))))).))))))..)) ( -31.80) >consensus GGAUUUUUGCGGUUGCCAUUCGGACGGAAGUUGGAAAGUUUAGAACGUUGCGGGGAAUU_UUCGUACUGCGAGGGGUU_________GGGUUCAGCCCAUUAAAGGUCAACUGUGAA .....((..((((((((.(((.(((....))).)))..(((((..(.((((((.............)))))).).............(((.....))).))))))).))))))..)) (-26.60 = -26.56 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:14 2006