Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,053,154 – 4,053,248 |
Length | 94 |
Max. P | 0.557222 |
Location | 4,053,154 – 4,053,248 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 96.58 |
Mean single sequence MFE | -24.58 |
Consensus MFE | -21.96 |
Energy contribution | -22.20 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.22 |
Structure conservation index | 0.89 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.557222 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4053154 94 + 22224390 AUCCGACUAUCUGCUACCUGAUUUGAAGCCAGCCAGCCAGACAAAUGAAGACGUCGAUUUAGUUUUCGGAUGGGUGGUCCUCGAAUCAAUCUCC ..................((((((((.((((.(((.((.(((..........)))((........)))).))).))))..))))))))...... ( -24.10) >DroSec_CAF1 66489 94 + 1 AUCCGACUAUCUGCUACCUGAUUUGAUGCCAGCCAGCCAGACAAAUGAAGACGUCGAUUUAGUUUUCAGAUGGGUGGUCCUCGAAUCAAUCUCC ..................((((((((.(...((((.(((......(((((((.........)))))))..))).))))).))))))))...... ( -23.30) >DroSim_CAF1 63695 94 + 1 AUCCGACUAUCUGCUACCUGAUUUGAUGCCAGCCAGCCAGACAAAUGAAGACGUCGAUUUAGUUUUCAGAUGGGUGGUCCUCGAAUCAAUCUCC ..................((((((((.(...((((.(((......(((((((.........)))))))..))).))))).))))))))...... ( -23.30) >DroEre_CAF1 66291 91 + 1 AUCCGACUAUCUGCUACCUGAUUUGAUG---GCCAGCCAGACAAAUGAAGACGUCGAUUUAGUUUUCAGAUGGGUGGUCCCCGAAUCAAUCUCC ..................(((((((..(---((((.(((......(((((((.........)))))))..))).)))))..)))))))...... ( -26.10) >DroYak_CAF1 64476 91 + 1 AUCCGACUAUCUGCUACCUGAUUUGAUG---GCCAGCCAGACAAAUGAAGACGUCGAUUUAGUUUUCAGAUGGGUGGUCCCCGAAUCAAUCUCC ..................(((((((..(---((((.(((......(((((((.........)))))))..))).)))))..)))))))...... ( -26.10) >consensus AUCCGACUAUCUGCUACCUGAUUUGAUGCCAGCCAGCCAGACAAAUGAAGACGUCGAUUUAGUUUUCAGAUGGGUGGUCCUCGAAUCAAUCUCC ..................((((((((.(...((((.(((......(((((((.........)))))))..))).))))).))))))))...... (-21.96 = -22.20 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:13 2006