Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,052,152 – 4,052,256 |
Length | 104 |
Max. P | 0.808717 |
Location | 4,052,152 – 4,052,256 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 90.13 |
Mean single sequence MFE | -31.36 |
Consensus MFE | -25.14 |
Energy contribution | -25.06 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.17 |
Mean z-score | -1.68 |
Structure conservation index | 0.80 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.808717 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4052152 104 + 22224390 AUCGGGCGGGUAUGCAAGACGAAUUUUCCGGCUGGCAACAUUUCGGAUAUUUCGGAGACGGCCACUUGUUGCCCGCGCAACAUCGAGAUUCGAUUCCAAACAA-A ...(((((((((.(((((..(((...(((((.((....))..)))))...)))(....).....)))))))))))).....((((.....)))).))......-. ( -35.80) >DroSec_CAF1 65507 96 + 1 AUCGGGCGGGAAUGCAAGUCGAAUUUUCCGGCUGGCAACAUUU---------CGGAGACGGCCACUUGUUGCCCGCGCAACAUCGAGAUUCGAUUCGAAACAAAA .(((((((((...((((((.(...(((((((.((....))..)---------))))))...).))))))..))))).....((((.....))))))))....... ( -34.30) >DroSim_CAF1 62731 96 + 1 AUCGGGCGGGAAUGCAAGACGAAUUUUCCGGCUGGCAACAUUU---------CGGAGACGGCCACUUGUUGCCCGCGCAACAUCGAGAUUCGAUUCGAAACAAAA .(((((((((...(((((......(((((((.((....))..)---------))))))......)))))..))))).....((((.....))))))))....... ( -31.40) >DroEre_CAF1 65306 95 + 1 AUCGGGUGGGAAGGCAAGACGAAUUUUCCAGCUGGCAACAUUU---------CGGAGACGGCCACUUGUUGCCCGCGCAACAUCGAGAUUCGAUUCGAAACAA-A .((((((.(((.((.((((....)))))).((.(((((((..(---------((....))).....))))))).))............))).)))))).....-. ( -27.90) >DroYak_CAF1 63492 95 + 1 AUCGGGUGGGAAGACAAGACGAAUUUUCCGGUAGGCAACAUUU---------CGGAGACGGCUACUUGUUGCCCGCGCAACAUCAAGAUUCUAUUCGAAACGA-A .((((((((((........((.......))(..(((((((..(---------((....))).....)))))))..)............)))))))))).....-. ( -27.40) >consensus AUCGGGCGGGAAUGCAAGACGAAUUUUCCGGCUGGCAACAUUU_________CGGAGACGGCCACUUGUUGCCCGCGCAACAUCGAGAUUCGAUUCGAAACAA_A ...(.(((((...(((((..((....)).(((.(....).............((....))))).)))))..))))).)...((((.....))))........... (-25.14 = -25.06 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:12 2006