Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,038,135 – 4,038,234 |
Length | 99 |
Max. P | 0.999734 |
Location | 4,038,135 – 4,038,234 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 96.75 |
Mean single sequence MFE | -33.48 |
Consensus MFE | -31.20 |
Energy contribution | -31.56 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.03 |
Mean z-score | -2.56 |
Structure conservation index | 0.93 |
SVM decision value | 3.97 |
SVM RNA-class probability | 0.999734 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4038135 99 + 22224390 UCGGGGCUGUUGGGGAGUGUGGGAAAAGCGGGCGGAAUCCAGAUGGAAUCCCAUAAUAUCUGUUUGUUGUCGCUGGCACUUUUUAAAAGCAGCUCUAAU ..((((((((((((((((((.((...((((((((((......((((....))))....))))))))))....)).))))))))))...))))))))... ( -38.60) >DroSec_CAF1 51634 98 + 1 -AGGGGCAGUUGGGGAGUGUGGGAAAAACGGGCGGCAUCCAGAUGGAAUCCCAUAAUAUCUGUUUGUUGUCGCUGGCACUUUUUAAAAGCAGCUCUAAU -.(((((..(((((((((((.((.......(((((((..((((((...........))))))..))))))).)).))))))))))).....)))))... ( -31.90) >DroSim_CAF1 47892 98 + 1 -AGGGGCAGUUGGGGAGUGUGGGAAAAACGGGCGGCAUCCAGAUGGAAUCCCAUAAUAUCUGUUUGUUGUCGCUGGCACUUUUUAAAAGCAGCUCUAAU -.(((((..(((((((((((.((.......(((((((..((((((...........))))))..))))))).)).))))))))))).....)))))... ( -31.90) >DroEre_CAF1 51450 98 + 1 -AGGGACAGUUGGGGAGUGUGGGAAAAGCGGGCGGAAUCCAGAUGGAAUCCCAUAAUAUCUGUUUGUUGUCGCUGGCACUUUUUAAAAGCAGCUCUAAU -((((....(((((((((((.((...((((((((((......((((....))))....))))))))))....)).)))))))))))......))))... ( -31.30) >DroYak_CAF1 50004 98 + 1 -AGGGGCAGUUGGGGAGUGUGGGAUAAGCGGGCGGAAUCCAGAUGGAAUCCCAUAAUAUCUGUUUGUUGUCGCUGGCACUUUUUAAAAGCAGCUCUAAU -.(((((..(((((((((((.((...((((((((((......((((....))))....))))))))))....)).))))))))))).....)))))... ( -33.70) >consensus _AGGGGCAGUUGGGGAGUGUGGGAAAAGCGGGCGGAAUCCAGAUGGAAUCCCAUAAUAUCUGUUUGUUGUCGCUGGCACUUUUUAAAAGCAGCUCUAAU ..(((((..(((((((((((.((...((((((((((......((((....))))....))))))))))....)).))))))))))).....)))))... (-31.20 = -31.56 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:07 2006