Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,924,466 – 3,924,586 |
Length | 120 |
Max. P | 0.914581 |
Location | 3,924,466 – 3,924,586 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.71 |
Mean single sequence MFE | -33.68 |
Consensus MFE | -23.51 |
Energy contribution | -25.57 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.06 |
Mean z-score | -2.07 |
Structure conservation index | 0.70 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.914581 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3924466 120 + 22224390 GUGCCUCGCUGCUGAAAAGAAUCCUGUGCAACUGUACUGUCUUGUUAACAGAACUGUUUUUCGGCGCGAUAAGUGCUUUGCACAGAUUGUGUGAACAAAGAUUUGAGCAGUGCUGUAAAU .(((..(((((((.(((......((((((((..((((((((.((((((((....))))....)))).))).))))).)))))))).((((....))))...))).)))))))..)))... ( -38.70) >DroSec_CAF1 41047 104 + 1 GUGCCUCGCUGCUGAAAAGAAUCCUGUGAAACUGUACUGCAUUGUUAACAGAACUGUUUUACGGCGCAACGAG----------------UGUGAAUAGAGAUUUCAGCAGUGCUGUAAAU .(((..(((((((((((......(((((((((.((.(((.........))).)).)))))))))((((.....----------------))))........)))))))))))..)))... ( -33.00) >DroSim_CAF1 31559 104 + 1 GUGCCUCGCUGCUGAAAAGAAUCCUGUGCAACUGUACUGUAUUGUUAACAGAACUGUUUUACGGCGCAACGAG----------------UGUGAAUAGAGAUUUCAGCAGUGCUGUAAAU .(((..(((((((((((......(((((.(((.((.((((.......)))).)).))).)))))((((.....----------------))))........)))))))))))..)))... ( -31.20) >DroEre_CAF1 47113 114 + 1 GUGCCUCGCUGCUGAGAAGAAUCCUGUGAAACUGUACUGUAUUGUAAACAGAACUGUUUCUCGGCGCGAUUAGUGCUUUGCA--ACUUGUGUGAAC----AUGAAAACAGUGCUGUACAU ((((.((((.(((((((((....((((.......(((......))).)))).....)))))))))))))..((..((.....--..(..((....)----)..)....))..)))))).. ( -31.80) >consensus GUGCCUCGCUGCUGAAAAGAAUCCUGUGAAACUGUACUGUAUUGUUAACAGAACUGUUUUACGGCGCAACGAG________________UGUGAACAGAGAUUUCAGCAGUGCUGUAAAU .(((..(((((((((((......(((((((((.((.((((.......)))).)).)))))))))((((.....................))))........)))))))))))..)))... (-23.51 = -25.57 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:24 2006