Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,918,475 – 3,918,568 |
Length | 93 |
Max. P | 0.789840 |
Location | 3,918,475 – 3,918,568 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.45 |
Mean single sequence MFE | -25.36 |
Consensus MFE | -9.06 |
Energy contribution | -9.70 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.18 |
Mean z-score | -1.90 |
Structure conservation index | 0.36 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.789840 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3918475 93 + 22224390 ------A-CACCAUAUUGGACA------CGAAUUUUCCAUCA--------------GCGAUCUGCAUUUUGGCCAAGGCCACCACUAGCCCCAAAUGAAUUUUUCGUGUUCGUUGGUGGA ------.-(((((...((((((------((((..(((.....--------------((.....))....((((....))))...............)))...)))))))))).))))).. ( -29.50) >DroSec_CAF1 35099 93 + 1 ------A-CUCCAUACUGGACA------CGAAUUUUCCAUCA--------------GCGUUGUGCAUUUUGGCCAAGGCCACCACUAGCCCCAAAUGAAUUUUUCGUGUUCGUCGGUGGA ------.-.(((((..((((((------((((..(((.....--------------((...(((.....((((....)))).)))..)).......)))...))))))))))...))))) ( -28.50) >DroEre_CAF1 41075 93 + 1 ------A-GUCCGUACUGGACA------CGAAUUUUCCAUCA--------------GCGAUCUGCUUUUCGGCCAAGGCCACCACUAGCCCCAAAUGAAUUUUUCGUGUUCGUUGGUGGA ------.-((((.....)))).------.......(((((((--------------((((...(((....(((....)))......))).....((((.....))))..))))))))))) ( -28.60) >DroYak_CAF1 40143 100 + 1 ------ACCUCGAUACUGGACACGAACACGAAUUUUCCAUCA--------------GCGAUCUGCUUUUUGGACAAGGCCACCACUAGCCCCAAAUGAAUUUUUCGUGUUCGUCAAUGGA ------.((........))..(((((((((((...((((..(--------------((.....)))...))))...(((........)))............)))))))))))....... ( -26.10) >DroAna_CAF1 25083 107 + 1 UUGAUUUUCUUUAAUCCGGACA------CGAAUUUUCCAUUUUCCUUCCAUCCAACGCGAUCUU-------CCCAAGGCCACCACUAUACUCAAAUGAAUUUUUCGUGUUAUGCUGGAGA ..............((((((((------((((.....(((((.......(((......)))...-------.....((...)).........))))).....)))))))....))))).. ( -14.10) >consensus ______A_CUCCAUACUGGACA______CGAAUUUUCCAUCA______________GCGAUCUGCAUUUUGGCCAAGGCCACCACUAGCCCCAAAUGAAUUUUUCGUGUUCGUCGGUGGA .................(((...............)))................................(((....))).(((((.((.....((((.....))))....)).))))). ( -9.06 = -9.70 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:21 2006