Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,898,171 – 3,898,278 |
Length | 107 |
Max. P | 0.978239 |
Location | 3,898,171 – 3,898,278 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 97.57 |
Mean single sequence MFE | -28.18 |
Consensus MFE | -26.90 |
Energy contribution | -26.90 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.64 |
Structure conservation index | 0.95 |
SVM decision value | 1.81 |
SVM RNA-class probability | 0.978239 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3898171 107 + 22224390 CUCGCAGCGGGCGAUUUUUCGCCAGUGGCAAAAGAAAGAAAAACAAAAAACGUAUUUACCUCAAAUUAAACAUUAUUAUGCCAGGGGAGGCUGGUCAUUUGAGGGUA ...((.((.(((((....))))).)).)).............................((((((((....(((....)))((((......))))..))))))))... ( -26.90) >DroSec_CAF1 15541 107 + 1 CUCGCAGCGGGCGAUUUUUCGCCAGUGGCAAAAGAAAGAAAAACAAAAAACGUAUUUACCUCAAAUUAAACAUUAUUAUGCCAGGGGAGGCUGGUCAUUUGAGGGCA ...((.((.(((((....))))).)).)).............................((((((((....(((....)))((((......))))..))))))))... ( -26.90) >DroSim_CAF1 12677 107 + 1 CUCGCAGCGGGCGAUUUUUCGCCAGUGGCAAAAGAAAGAAAAACAAAAAACGUAUUUACCUCAAAUUAAACAUUAUUAUGCCAGGGGAGGCUGGUCAUUUGAGGGCA ...((.((.(((((....))))).)).)).............................((((((((....(((....)))((((......))))..))))))))... ( -26.90) >DroEre_CAF1 17630 103 + 1 CUCGCAGCGGGCGAUUUUUCGCCAGUGGCGAAA----GAAAAACAAAAAACGUAUUUACCUCAAAUUAAACAUUAUUAUGCCAGGGGAGGCUGGUCAUUUGAGGGCA .((((.((.(((((....))))).)).))))..----.....................((((((((....(((....)))((((......))))..))))))))... ( -30.10) >DroYak_CAF1 18034 107 + 1 CUCGCAGCGGGCGAUUUUUCGCCAGUGGCGAAAGAAAGAAAAACAAAAAACGUAUUUACCUCAAAUUAAACAUUAUUAUGCCAGGGGAGGCUGGUCAUUUGAGGGCA .((((.((.(((((....))))).)).))))...........................((((((((....(((....)))((((......))))..))))))))... ( -30.10) >consensus CUCGCAGCGGGCGAUUUUUCGCCAGUGGCAAAAGAAAGAAAAACAAAAAACGUAUUUACCUCAAAUUAAACAUUAUUAUGCCAGGGGAGGCUGGUCAUUUGAGGGCA ...((.((.(((((....))))).)).)).............................((((((((....(((....)))((((......))))..))))))))... (-26.90 = -26.90 + 0.00)
Location | 3,898,171 – 3,898,278 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 97.57 |
Mean single sequence MFE | -25.34 |
Consensus MFE | -25.58 |
Energy contribution | -25.34 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.51 |
Structure conservation index | 1.01 |
SVM decision value | 1.75 |
SVM RNA-class probability | 0.975299 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3898171 107 - 22224390 UACCCUCAAAUGACCAGCCUCCCCUGGCAUAAUAAUGUUUAAUUUGAGGUAAAUACGUUUUUUGUUUUUCUUUCUUUUGCCACUGGCGAAAAAUCGCCCGCUGCGAG ...((((((((.....(((......))).(((......)))))))))))...........................((((..(.(((((....))))).)..)))). ( -24.50) >DroSec_CAF1 15541 107 - 1 UGCCCUCAAAUGACCAGCCUCCCCUGGCAUAAUAAUGUUUAAUUUGAGGUAAAUACGUUUUUUGUUUUUCUUUCUUUUGCCACUGGCGAAAAAUCGCCCGCUGCGAG ...((((((((.....(((......))).(((......)))))))))))...........................((((..(.(((((....))))).)..)))). ( -24.50) >DroSim_CAF1 12677 107 - 1 UGCCCUCAAAUGACCAGCCUCCCCUGGCAUAAUAAUGUUUAAUUUGAGGUAAAUACGUUUUUUGUUUUUCUUUCUUUUGCCACUGGCGAAAAAUCGCCCGCUGCGAG ...((((((((.....(((......))).(((......)))))))))))...........................((((..(.(((((....))))).)..)))). ( -24.50) >DroEre_CAF1 17630 103 - 1 UGCCCUCAAAUGACCAGCCUCCCCUGGCAUAAUAAUGUUUAAUUUGAGGUAAAUACGUUUUUUGUUUUUC----UUUCGCCACUGGCGAAAAAUCGCCCGCUGCGAG ...((((((((.....(((......))).(((......))))))))))).....................----..((((..(.(((((....))))).)..)))). ( -26.60) >DroYak_CAF1 18034 107 - 1 UGCCCUCAAAUGACCAGCCUCCCCUGGCAUAAUAAUGUUUAAUUUGAGGUAAAUACGUUUUUUGUUUUUCUUUCUUUCGCCACUGGCGAAAAAUCGCCCGCUGCGAG ...((((((((.....(((......))).(((......)))))))))))...........................((((..(.(((((....))))).)..)))). ( -26.60) >consensus UGCCCUCAAAUGACCAGCCUCCCCUGGCAUAAUAAUGUUUAAUUUGAGGUAAAUACGUUUUUUGUUUUUCUUUCUUUUGCCACUGGCGAAAAAUCGCCCGCUGCGAG ...((((((((.....(((......))).(((......)))))))))))...........................((((..(.(((((....))))).)..)))). (-25.58 = -25.34 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:15 2006