Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,889,315 – 3,889,416 |
Length | 101 |
Max. P | 0.850437 |
Location | 3,889,315 – 3,889,416 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 84.37 |
Mean single sequence MFE | -29.65 |
Consensus MFE | -19.59 |
Energy contribution | -20.31 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.19 |
Mean z-score | -2.33 |
Structure conservation index | 0.66 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.850437 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3889315 101 + 22224390 UUUCCUUUGGC-CAGCUUUUCCUUUUCACUUGAUGGUUGUUUGUUAAUUUGCGAAAGCCCCCCC-----CACCAGCCAUUCGAAAAGUGAAAGGG-GGGAGGGUUUUU ........(((-(..(((..(((((((((((((((((((..((.......((....))......-----)).))))))))....)))))))))))-..)))))))... ( -34.92) >DroSec_CAF1 6831 106 + 1 UUUCCUUUGGCCCAGCUUUUCCUUUUCACUUGAUGGUG--UUGUUAAUUUGCGAAAGCCCCCCUCCCUCCCCCCACCAUUCGAAAAGUGAAAGGGAGAGAGAGCUUUU .............(((((((((((((((((((((((((--..........((....))...............)))))))....))))))))))))...))))))... ( -29.61) >DroSim_CAF1 3901 106 + 1 UUUCCUUUGGC-CAGCUUUUCCUUUUCACUUGAUGGUUGUUUGUUAAUUUGCGAAAGCCCCCCUCCCUUCCCCCACCAUUCGAAAAGUGAAAGGG-GGGAGGGUUUUU ......(((((-.(((....((...((....)).))..))).)))))...((....))......((((((((((..((((.....))))...)))-)))))))..... ( -31.10) >DroEre_CAF1 7414 91 + 1 UUUCCUUUGGC-CAGCUUUUCCUUUUCACUUGAUGGUUGUUUGUUAAUUUGCGAAAGGCCCC--------------CAUCCGAAAUGUGAAAGGG--GGAGGGCUUUU ........(((-(....(..(((((((((..(((((...(((((......)))))......)--------------))))......)))))))))--..).))))... ( -27.00) >DroYak_CAF1 9294 91 + 1 UUUCCUUAGGC-CAGCUUUUCCUUUUCAUUUGAUGGUUGUUUGUUAAUUUGCGAAAGGCCCC--------------CAUCCAAAAUGUGAAAGGG--GGAGGGUUUUU .......((((-(..(((..((((((((((((((((...(((((......)))))......)--------------))))..))))).)))))).--.)))))))).. ( -25.60) >consensus UUUCCUUUGGC_CAGCUUUUCCUUUUCACUUGAUGGUUGUUUGUUAAUUUGCGAAAGCCCCCC______C_CC__CCAUUCGAAAAGUGAAAGGG_GGGAGGGUUUUU .............((((((((((((((((((((((((.............((....))................))))))....)))))))))))...)))))))... (-19.59 = -20.31 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:09 2006