Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,831,199 – 3,831,318 |
Length | 119 |
Max. P | 0.942466 |
Location | 3,831,199 – 3,831,290 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 65.94 |
Mean single sequence MFE | -36.83 |
Consensus MFE | -15.83 |
Energy contribution | -15.77 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.27 |
Mean z-score | -2.38 |
Structure conservation index | 0.43 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.942466 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3831199 91 - 22224390 ACCUGUGCUU-AGCCUUCGAUGUGGCUGCAAAUGUGAGGCUGCC--GGCA----GUGGGUGGCAG--------CUUGGUAUGGGGGCGUG---A---------AGGAGGAGCAGAAGG- .(((.(((((-..((((((.....(((.(..(((..((((((((--(.(.----...).))))))--------)))..))).).))).))---)---------)))..)))))..)))- ( -39.90) >DroSec_CAF1 16642 94 - 1 ACCUGUGCUG-AGCCUUCGAUGUGGCUGCAAAUGUGAGGCUGCC--GGCA----GUGGGUGGCAG--------CUUGGUAUGGGGGCGUGGCAA---------GGGAGGAGCAGGAGG- .(((((....-..(((((..(((.((.((..(((..((((((((--(.(.----...).))))))--------)))..)))....)))).))).---------.))))).)))))...- ( -39.40) >DroEre_CAF1 20457 116 - 1 ACCUGUGCUG-AGCCUUCGAUGUGGCUCCAAGUGUGAGGCUGCU--GGCAGUGGAUGGGUGGCAAGGUGGCAAGUUGGCAUGGAGGAGUCACGAUGGAUGUGGAGUAGGAGCAGGAGGU .(((((.(((-..((.((.((((((((((...(((.((....))--.)))((.(((..((.((...)).))..))).)).....)))))))).)).))...))..)))..))))).... ( -41.70) >DroAna_CAF1 16881 84 - 1 ACCUGUGCUGCGGCCUUCGAUGGGGCUCCAAAUACGAGGCUGUUUCUUCA----GUGGGUGGCGU---GG--------GA---GGU-------A---------GUGAGUGUUAGGGGG- .((((..((((.((((((.(((..((.(((.....((((......)))).----.)))))..)))---.)--------))---)))-------.---------)).))..).)))...- ( -26.30) >consensus ACCUGUGCUG_AGCCUUCGAUGUGGCUCCAAAUGUGAGGCUGCC__GGCA____GUGGGUGGCAG________CUUGGUAUGGGGGCGUG___A_________AGGAGGAGCAGGAGG_ .(((((..((.((((........)))).))........((..((.............))..))...............................................))))).... (-15.83 = -15.77 + -0.06)
Location | 3,831,226 – 3,831,318 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 76.71 |
Mean single sequence MFE | -25.66 |
Consensus MFE | -18.36 |
Energy contribution | -18.68 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.15 |
Mean z-score | -1.31 |
Structure conservation index | 0.72 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598191 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3831226 92 + 22224390 ACCAAG--------CUGCCACCCAC----UGCC--GGCAGCCUCACAUUUGCAGCCACAUCGAAGGCU-AAGCACAGGUGGCAUUAUUUACGCAGUUCGC-------UUCCUGC ......--------.(((((((...----(((.--.((((........))))((((........))))-..)))..)))))))........((((.....-------...)))) ( -26.40) >DroSec_CAF1 16672 92 + 1 ACCAAG--------CUGCCACCCAC----UGCC--GGCAGCCUCACAUUUGCAGCCACAUCGAAGGCU-CAGCACAGGUGGCAUUAUUUACGCAGUUCGC-------UUCCUGC ......--------.(((((((...----(((.--(((((........))))((((........))))-).)))..)))))))........((((.....-------...)))) ( -25.80) >DroEre_CAF1 20497 104 + 1 GCCAACUUGCCACCUUGCCACCCAUCCACUGCC--AGCAGCCUCACACUUGGAGCCACAUCGAAGGCU-CAGCACAGGUGGCAUUAUUUACGCAGUUCGC-------UUCCUGC .......(((((((((((..........(((..--..)))...........(((((........))))-).))).))))))))........((((.....-------...)))) ( -31.80) >DroYak_CAF1 16430 91 + 1 ---------UCAACUUGCCACCCAU----UUCC--AGCAGCCUCACAUUUGGAGCCACAUCGAAGGCU-CAGCACAGGUGGUAUUAUUUACGCAGUUCAC-------UUCCUGU ---------......(((((((...----....--..(((........)))(((((........))))-)......)))))))........((((.....-------...)))) ( -20.60) >DroAna_CAF1 16901 99 + 1 C--------CC---ACGCCACCCAC----UGAAGAAACAGCCUCGUAUUUGGAGCCCCAUCGAAGGCCGCAGCACAGGUGGCAAUAUUUACGCAGUUCACUAGCAGCUCCUUGC .--------..---..((((((..(----((........((((((....(((....))).)).))))..)))....)))))).........((((....)).)).......... ( -23.70) >consensus ACCAA_____C___CUGCCACCCAC____UGCC__AGCAGCCUCACAUUUGGAGCCACAUCGAAGGCU_CAGCACAGGUGGCAUUAUUUACGCAGUUCGC_______UUCCUGC ................((((((.......(((....))).........(((.((((........)))).)))....)))))).........((((...............)))) (-18.36 = -18.68 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:48 2006