Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,809,460 – 3,809,568 |
Length | 108 |
Max. P | 0.609047 |
Location | 3,809,460 – 3,809,568 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 90.49 |
Mean single sequence MFE | -37.57 |
Consensus MFE | -30.79 |
Energy contribution | -30.43 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.31 |
Mean z-score | -1.98 |
Structure conservation index | 0.82 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.609047 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3809460 108 + 22224390 GCGCGUCUUCAACACGGUGAGCUUCUGACCCAGUGUCUUAAGCGACUCCAUGGAGUCACUCAUGCUGGACUUGUGUCGCUCAUCCUGGGAUUUCCUUAAGGCGCGUUC (((((((((...((.(((((((........((((((....((.(((((....))))).)).))))))(((....)))))))))).))((....))..))))))))).. ( -42.40) >DroSec_CAF1 8318 108 + 1 GCGCGUCUUCAACACAGUGAGCUUCUGACCCAGUGUCUUAAGCGAUUCCACGGAGUCACUCAUGCUGGACUUGUGUCGCCCAUCCUGGGAUUUCCUUAAGGCGCGUUC (((((((((.....((((..((((..(((.....)))..))))(((((....)))))......))))(((....))).(((.....)))........))))))))).. ( -36.50) >DroSim_CAF1 8597 108 + 1 GCGCGUCUUCAACACAGUGAGCUUCUGACCCAGUGUCUUAAGCGAUUCCAUGGAGUCACUCAUGCUAGACUUGUGUCGCCCAUCCUGGGAUUUCCUUAAGGCGCGUUC (((((((((..(((((((..((((..(((.....)))..))))(((((....)))))...........)).)))))..(((.....)))........))))))))).. ( -34.90) >DroEre_CAF1 8343 108 + 1 GCGCGUCUUCAACACGGUGAGCUUCUGACCCAGUGUCUUGAGCGACUCCAUGGAGUCACUCAUGCUGGACUUGUGUCGCCCAUCCUGGGAUUUCCUUAAGGCGCGUUC (((((((((...((.((((.((........((((....((((.(((((....))))).)))).))))(((....))))).)))).))((....))..))))))))).. ( -41.70) >DroYak_CAF1 8422 108 + 1 GCGCGUCUUUAACACGGUGAGCUUCUGACCCAAUGUCUUAAGCGAUUCCAUGGAGUCACUCAUGCUGGACUUGUGUCGCCCAUCCUGGGAUUUCCUCAAGGCGCGUUC (((((((((.....((((..((((..(((.....)))..))))(((((....)))))......))))(((....))).(((.....)))........))))))))).. ( -35.90) >DroAna_CAF1 8820 108 + 1 UCGCGUUUUCAGAACGGUGAGCUUCUGGCCCAGAUUCCUCAGCGACUCCAUCGAGUCGCUCAUACUGGACUUGUGCUUUCCAUCCUGCGACUUCCUCAGGGCUCGUUC ...........((((((.((((....((.((((.......((((((((....))))))))....)))).))...)))).)).(((((.(.....).)))))...)))) ( -34.00) >consensus GCGCGUCUUCAACACGGUGAGCUUCUGACCCAGUGUCUUAAGCGACUCCAUGGAGUCACUCAUGCUGGACUUGUGUCGCCCAUCCUGGGAUUUCCUUAAGGCGCGUUC (((((((((.....(((((.((((..(((.....)))..))))(((((....))))).....)))))(((....))).(((.....)))........))))))))).. (-30.79 = -30.43 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:39 2006