Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,807,324 – 3,807,443 |
Length | 119 |
Max. P | 0.518135 |
Location | 3,807,324 – 3,807,443 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 82.02 |
Mean single sequence MFE | -50.15 |
Consensus MFE | -30.57 |
Energy contribution | -32.02 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.26 |
Mean z-score | -1.80 |
Structure conservation index | 0.61 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.518135 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3807324 119 - 22224390 UGGCCAAGGAGGCCAAGAACUGUCACACCCAAUUGAGUGAGCUUCUCCACAAGGUUAAGGAAGCGAGCACGGCGGUAGAAACUGUUACCGUUGUGGAGACCGUGGUGGCCGUGACCGCU .((.((....(((((...((.(((.(((.(....).))).((((((((....))....))))))...(((((((((((......)))))))))))..))).))..))))).)).))... ( -43.40) >DroVir_CAF1 8076 119 - 1 UGGCCAAGGAGGCCAAGAAUGUGCACAGCCAGCUCUCGGAGCUGCUGCACAAGGUGAAGGAGGCCAGCACCGCGGUGGAGACGGUCACCGUCGUCGAGACCGUUGUCGCCGUCACCGCG (((((.....)))))....((((((..((.(((((...))))))))))))).((((..((...))..))))(((((((.(((((((..((....)).))))))).......))))))). ( -52.50) >DroPse_CAF1 5590 119 - 1 UGGCCAAGGAGGCCAAAAACUGCCACACCCAGCUGACGGAACUCCUGCAGAAGGUGAAAGAAGCCAGCACGGCGGUGGAAACGGUCACUGUCGUGGAGACAGUGGUCGCUGUGACGGCU (((((.....)))))..........((((...(((..((....))..)))..)))).....((((..((((((...(....)(..(((((((.....)))))))..)))))))..)))) ( -53.80) >DroMoj_CAF1 4111 119 - 1 UGGCCAAGGAGGCGAAGAAUGUGCACGUCCAGCUGACGGAGCUGCUGCAGAAGGUGAAGGAGGCGAGCACCGCAGUGGAGACGGUCACCGUGGUGGAAACAGUUGUCGCUGUCACCGCG ..(((.....))).......(((..(((((.((((.(((.((((((.((.....)).....))).))).))))))).).))))..)))(((((((...(((((....)))))))))))) ( -43.50) >DroAna_CAF1 6433 119 - 1 UGGCCCGCGAGGCCAAGAACUGCCACGCCCAGCUGAGCGAGCUGCUGGCGAAGGUGAAGGAGGCCAGCUCCGCGGUGGAGACGGUCACCGUCGUGGAGACGGUGGUGGCCGUGACGGCG (((((.....)))))......(((.((((..((.((((..(((.((.((....))..))..)))..)))).))))))...(((((((((..(((....)))..)))))))))...))). ( -57.40) >DroPer_CAF1 5602 119 - 1 UGGCCAAGGAGGCCAAAAACUGCCACACCCAGCUGACGGAACUCCUGCAGAAGGUGAAGGAAGCCAGCACGGCGGUGGAAACGGUCACUGUCGUGGAGACAGUGGUAGCUGUGACGGCU (((((.....))))).......((.((((...(((..((....))..)))..))))..)).((((..((((((..((....)).((((((((.....))))))))..))))))..)))) ( -50.30) >consensus UGGCCAAGGAGGCCAAGAACUGCCACACCCAGCUGACGGAGCUGCUGCAGAAGGUGAAGGAAGCCAGCACCGCGGUGGAAACGGUCACCGUCGUGGAGACAGUGGUCGCCGUGACCGCG (((((.....)))))..........((((...(((.(((.....))))))..))))......(((..(((((((((((......)))))))))))...(((((....)))))...))). (-30.57 = -32.02 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:31 2006