Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,765,050 – 3,765,155 |
Length | 105 |
Max. P | 0.716972 |
Location | 3,765,050 – 3,765,155 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 88.04 |
Mean single sequence MFE | -32.20 |
Consensus MFE | -26.14 |
Energy contribution | -27.20 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.04 |
Mean z-score | -1.63 |
Structure conservation index | 0.81 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.716972 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3765050 105 - 22224390 GCACCUGGAGGCGCAUUGCGGCUAAGUUGAUUCGAAGGAGCGAGGCUUUGUUGCCGCAUUCCCGUUCCUCUUCGGCCGACCCUCGGCUUCCAUUUCCCAUUUCCC------------- ......(((((.((..((((((.(((((..(((....)))...)))))....)))))).....)).)))))..(((((.....))))).................------------- ( -31.90) >DroSec_CAF1 18707 105 - 1 GCACCUGGAGGCGCAUUGCGGCUAAGUUGAUUCCAAGGAGCGAGGCUUUGUAGCCGCAUUCCCGUUCCUCUUCGGUCGACCCUCCGCUUCCAUUUCCCAUUUUCC------------- .....((((((((...((((((((((((..(((....)))...))))...))))))))...(((........))).........)))))))).............------------- ( -32.00) >DroEre_CAF1 19109 118 - 1 GCACCUGGAGGCGCAUUGCGGCUAAGUUGAUUCCAAGGAGCGAGGCUUUGUAGCCGCAUUCCCAUUCCUCUUUUGCCAACAAUCCGCUUCCAUUUCCCAUUUUCCAUUUCCCAUCCCA .....((((((((.((((.(((.(((..((......((((.(.((((....)))).).))))...))..)))..)))..)))).)))))))).......................... ( -32.50) >DroYak_CAF1 20356 105 - 1 GCACCUGGAGGCGCAUUGCGGCUAAGUUGAUUCCAAGGAGCGAGGCUUUGUAGCCUCAUUCCCGUUCCUCUUUCGCCAACCCUCCGCUUCCAUUUCCCAUUUCCC------------- .....((((((((......(((.(((..((......((((.((((((....)))))).))))...))..)))..))).......)))))))).............------------- ( -32.42) >consensus GCACCUGGAGGCGCAUUGCGGCUAAGUUGAUUCCAAGGAGCGAGGCUUUGUAGCCGCAUUCCCGUUCCUCUUCGGCCAACCCUCCGCUUCCAUUUCCCAUUUCCC_____________ .....((((((((.....((((((((..((......((((.(.(((......))).).))))...))..))).)))))......)))))))).......................... (-26.14 = -27.20 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:19 2006