Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,762,632 – 3,762,749 |
Length | 117 |
Max. P | 0.968826 |
Location | 3,762,632 – 3,762,749 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 76.51 |
Mean single sequence MFE | -28.20 |
Consensus MFE | -14.93 |
Energy contribution | -15.80 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.26 |
Mean z-score | -2.57 |
Structure conservation index | 0.53 |
SVM decision value | 1.63 |
SVM RNA-class probability | 0.968826 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3762632 117 - 22224390 UUAUCCUUUGUUCAAGAGGAGAAAAGCAAUGGUAUUGUUUGGCCUUUUUGCACAAUGGCAAAUGGAAUUGUAAAGUUGCAGCAAAAGUUGUAAAUUGCAAUAAAAUAAAAAGCGUAA ....((.((((.(((((((.(..(((((((...)))))))..)))))))).)))).))........(((((((..(((((((....))))))).)))))))................ ( -27.50) >DroSec_CAF1 16319 116 - 1 UUAUCCAUUGUUCAAGAGCAGAAAAGCAAAGGCAUUGUUUGGCCGCUUUGCACAAUGGCAAAUGGAAUUGUGAAGUUGCAACAAAAGUUGUAAAUUGCAAUAA-UUAAAAAGUGUAU ....(((((((...(((((.(..((((((.....))))))..).)))))..)))))))........((((..(..(((((((....))))))).)..))))..-............. ( -29.50) >DroEre_CAF1 16943 106 - 1 UUCUUCUUUGUUGAAGAGC--------AAAGGCAUUGU-UGGCCAUUUUGCACAAUGGGAAAUGCCAUUGUAAAGUUGCAACCAAAGUUGUACAUAGCCAUA--GUAAAAUGUGAAU .(((((......)))))((--------((((((.....-..)))..)))))(((((((......)))))))...((.(((((....))))))).....((((--......))))... ( -27.20) >DroYak_CAF1 16272 104 - 1 UUAUCCAUUGUUGAAGUGCC----AUUGAAGGCAUUGU-UGGCUAUUUCGCACAAUGGAGAAUGGAAUUGUAAAGUUGCAAGCAGAGUUGUAAAUUGCAAUAA-GUAAGA------- ...(((((((((((((((((----(.((....))....-)))).)))))).)))))))).......(((((((..((((((......)))))).)))))))..-......------- ( -28.60) >consensus UUAUCCAUUGUUCAAGAGCA____AGCAAAGGCAUUGU_UGGCCAUUUUGCACAAUGGCAAAUGGAAUUGUAAAGUUGCAACAAAAGUUGUAAAUUGCAAUAA_GUAAAAAGUGUAU ....(((((((..............((((.(((........)))...)))))))))))........((((((...(((((((....)))))))..))))))................ (-14.93 = -15.80 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:18 2006